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S16_GE16_scaffold_5545_prodigal-single.1__X__X__00205
Bact-VirS16_GE16_scaffold_5545_prodigal-single.1__X__X__00205
Identity
- Kingdom:
- phage
Quality
53.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-75
Domain cluster:
rep: SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00017__D728-793
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18905.6 best | DUF5661 | 53.8 | 2.70e-14 | 75.0% | 75.4% |
D2
medium
residues 422-496
Domain cluster:
representative
CATH (62)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3u1wA02 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.81 | 55.0 | 5.87e-01 | 80.0% | 80.3% |
| 3u1wA01 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.78 | 57.0 | 4.24e-01 | 94.7% | 31.7% |
| 4b63A00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.70 | 50.0 | 3.07e-01 | 74.7% | 36.1% |
| 3wa2X01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.69 | 58.0 | 5.52e-01 | 94.7% | 79.3% |
| 2krtA01 | 3.10.450.270 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.69 | 48.0 | 4.35e-01 | 73.3% | 87.4% |
| 3tdgA01 | 3.10.450.520 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 49.0 | 5.16e-01 | 86.7% | 86.4% |
| 1i1iP02 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.67 | 58.0 | 4.70e-01 | 100.0% | 82.8% |
| 2du7A02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.66 | 58.0 | 4.13e-01 | 100.0% | 41.2% |
| 2du7B03 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.66 | 58.0 | 3.85e-01 | 100.0% | 30.6% |
| 3dghA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.66 | 48.0 | 3.99e-01 | 76.0% | 82.9% |
| 4i79A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.65 | 45.0 | 3.02e-01 | 94.7% | 17.7% |
| 2xglA00 | 3.10.450.300 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein | 0.64 | 48.0 | 4.51e-01 | 80.0% | 82.4% |
| 1eyqA02 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.64 | 56.0 | 4.39e-01 | 98.7% | 88.1% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 48.0 | 5.16e-01 | 86.7% | 95.2% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 46.0 | 4.86e-01 | 85.3% | 89.4% |
| 1e5tA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.62 | 47.0 | 3.02e-01 | 81.3% | 18.1% |
| 3ec7A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.62 | 55.0 | 4.66e-01 | 98.7% | 69.7% |
| 2zplB00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.61 | 41.0 | 3.84e-01 | 70.7% | 66.0% |
| 1n2bB02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.60 | 43.0 | 3.87e-01 | 74.7% | 54.8% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 44.0 | 3.98e-01 | 77.3% | 99.0% |
| 7pkwA01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 45.0 | 4.13e-01 | 81.3% | 81.6% |
| 2bz0A00 | 3.40.50.10990 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II | 0.60 | 48.0 | 3.65e-01 | 85.3% | 56.5% |
| 2kmsA02 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.59 | 41.0 | 4.51e-01 | 96.0% | 93.1% |
| 3tqmA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.59 | 50.0 | 4.78e-01 | 100.0% | 82.2% |
| 2glxA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.59 | 53.0 | 3.78e-01 | 98.7% | 35.1% |
| 2ywqA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.58 | 48.0 | 4.61e-01 | 100.0% | 80.7% |
| 3f6gA01 | 3.30.160.740 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 41.0 | 4.52e-01 | 84.0% | 96.6% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 45.0 | 3.81e-01 | 86.7% | 97.7% |
| 3c1aA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.57 | 51.0 | 4.12e-01 | 100.0% | 62.1% |
| 3rc2A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.57 | 48.0 | 3.66e-01 | 98.7% | 37.9% |
| 1jpdX01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.57 | 43.0 | 4.04e-01 | 84.0% | 98.0% |
| 4dokA01 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.57 | 50.0 | 4.01e-01 | 100.0% | 89.0% |
| 2c9kA03 | 2.100.10.10 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain | 0.57 | 41.0 | 3.03e-01 | 76.0% | 88.2% |
| 4ec6A00 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 47.0 | 4.24e-01 | 94.7% | 90.8% |
| 2qguA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 49.0 | 4.51e-01 | 98.7% | 99.0% |
| 1dlcA03 | 2.100.10.10 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain | 0.56 | 40.0 | 3.00e-01 | 76.0% | 88.3% |
| 3sluB01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 41.0 | 3.92e-01 | 81.3% | 69.2% |
| 2rqlA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.55 | 47.0 | 4.40e-01 | 100.0% | 77.9% |
| 4hadB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 49.0 | 3.62e-01 | 100.0% | 47.2% |
| 1gkuB07 | 2.60.510.20 | Mainly Beta › Sandwich › EV matrix protein fold › | 0.55 | 44.0 | 4.00e-01 | 88.0% | 87.3% |
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 45.0 | 4.58e-01 | 94.7% | 98.6% |
| 3s95A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 42.0 | 4.02e-01 | 84.0% | 88.6% |
| 1akoA00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.54 | 47.0 | 3.26e-01 | 100.0% | 85.8% |
| 1xkiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 43.0 | 3.62e-01 | 88.0% | 97.7% |
| 2lrsA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 42.0 | 4.30e-01 | 90.7% | 100.0% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 43.0 | 4.38e-01 | 98.7% | 100.0% |
| 2qcuB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 44.0 | 3.23e-01 | 97.3% | 87.8% |
| 2iqgA02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.53 | 40.0 | 2.96e-01 | 85.3% | 72.6% |
| 7r97A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 41.0 | 4.28e-01 | 89.3% | 100.0% |
| 4dduA07 | 2.60.510.20 | Mainly Beta › Sandwich › EV matrix protein fold › | 0.53 | 41.0 | 3.73e-01 | 86.7% | 82.2% |
| 2vz6B01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 40.0 | 3.96e-01 | 84.0% | 97.6% |
| 1omoA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.52 | 44.0 | 3.61e-01 | 97.3% | 81.9% |
| 3ec9A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 45.0 | 3.87e-01 | 100.0% | 76.0% |
| 3uqcB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 42.0 | 3.96e-01 | 90.7% | 95.7% |
| 4ks7A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 42.0 | 3.87e-01 | 89.3% | 83.7% |
| 4mp8A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.51 | 43.0 | 3.50e-01 | 98.7% | 84.5% |
| 3hk4A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.35e-01 | 81.3% | 91.5% |
| 2dixA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 42.0 | 4.22e-01 | 98.7% | 93.6% |
| 3zg9B02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 41.0 | 2.75e-01 | 94.7% | 53.4% |
| 5l37C00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.51 | 37.0 | 3.59e-01 | 78.7% | 82.6% |
| 1oqwA00 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.50 | 38.0 | 3.16e-01 | 84.0% | 76.4% |
| 2aehA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 35.0 | 3.21e-01 | 76.0% | 72.1% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4950455 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.74 | 56.0 | 5.85e-01 | 81.3% | 95.7% |
| 3393937 | 5.1.4.323 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_1st | 0.73 | 52.0 | 3.31e-01 | 81.3% | 16.7% |
| 1688895 | 2003.1.3.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Lys_Orn_oxgnase | 0.71 | 50.0 | 3.73e-01 | 74.7% | 86.2% |
| 3941745 | 241.15.1.4 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › DUF932 | 0.70 | 63.0 | 5.03e-01 | 98.7% | 84.1% |
| 3631382 | 2003.1.3.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Lys_Orn_oxgnase | 0.69 | 49.0 | 3.24e-01 | 74.7% | 50.7% |
| 3670792 | 243.3.1.67 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Phytochelatin_C | 0.69 | 48.0 | 5.12e-01 | 72.0% | 96.9% |
| 5045854 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.68 | 56.0 | 5.53e-01 | 94.7% | 85.0% |
| 4544563 | 3561.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 | 0.67 | 59.0 | 3.60e-01 | 100.0% | 26.7% |
| 3462235 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.67 | 49.0 | 4.87e-01 | 78.7% | 93.8% |
| 1678532 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.64 | 50.0 | 5.17e-01 | 94.7% | 88.6% |
| 178803 | 243.3.1.9 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YebF | 0.64 | 48.0 | 4.51e-01 | 80.0% | 82.4% |
| 3968646 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.64 | 47.0 | 3.98e-01 | 80.0% | 74.6% |
| 3948467 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.64 | 49.0 | 5.21e-01 | 86.7% | 95.4% |
| 5012842 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.63 | 56.0 | 5.38e-01 | 100.0% | 89.4% |
| 3221538 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 45.0 | 2.89e-01 | 89.3% | 15.8% |
| 3399403 | 206.1.1.88 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL, DUF1679 | 0.62 | 46.0 | 2.88e-01 | 81.3% | 29.9% |
| 1678533 | 243.3.1.10 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 | 0.62 | 50.0 | 5.17e-01 | 100.0% | 95.7% |
| 3502794 | 4.8.1.2 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow | 0.62 | 41.0 | 4.39e-01 | 76.0% | 80.0% |
| 4935325 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.61 | 52.0 | 3.35e-01 | 93.3% | 32.8% |
| 4586356 | 220.1.1.81 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF2550 | 0.61 | 46.0 | 3.73e-01 | 78.7% | 55.6% |
| 3825504 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.61 | 52.0 | 4.94e-01 | 100.0% | 92.2% |
| 4617128 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.61 | 52.0 | 4.62e-01 | 100.0% | 68.7% |
| 3248847 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.60 | 46.0 | 3.46e-01 | 81.3% | 33.9% |
| 3958057 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 45.0 | 3.69e-01 | 78.7% | 55.6% |
| 3459866 | 2.1.1.143 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF936 | 0.60 | 46.0 | 3.75e-01 | 80.0% | 54.6% |
| 5041112 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.60 | 46.0 | 4.78e-01 | 94.7% | 90.0% |
| 3626264 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.60 | 47.0 | 3.09e-01 | 89.3% | 21.1% |
| 3284774 | 321.1.1.11 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › DUF2126 | 0.59 | 50.0 | 3.26e-01 | 100.0% | 29.2% |
| 3595446 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 42.0 | 3.75e-01 | 74.7% | 83.8% |
| 5025341 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.59 | 49.0 | 4.59e-01 | 100.0% | 80.0% |
| 4085332 | 76.1.1.1 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M | 0.58 | 42.0 | 3.03e-01 | 76.0% | 82.7% |
| 3387871 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.58 | 49.0 | 4.31e-01 | 98.7% | 62.6% |
| 3271321 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.58 | 47.0 | 3.91e-01 | 89.3% | 78.5% |
| 3479384 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 41.0 | 3.00e-01 | 74.7% | 47.1% |
| 5027812 | 375.1.1.5 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L44 | 0.57 | 41.0 | 3.87e-01 | 76.0% | 92.5% |
| 3702988 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.57 | 50.0 | 4.51e-01 | 100.0% | 96.2% |
| 4929652 | 375.1.1.5 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L44 | 0.57 | 40.0 | 3.83e-01 | 74.7% | 94.4% |
| 4472716 | 330.1.1.3 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer | 0.57 | 49.0 | 4.17e-01 | 100.0% | 88.5% |
| 3587653 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 45.0 | 3.86e-01 | 86.7% | 88.3% |
| 3801624 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.56 | 48.0 | 4.47e-01 | 100.0% | 75.0% |
| 3413365 | 220.1.1.27 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD | 0.56 | 50.0 | 3.89e-01 | 98.7% | 50.6% |
| 3607857 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 48.0 | 4.41e-01 | 100.0% | 76.0% |
| 5019855 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 41.0 | 4.21e-01 | 80.0% | 91.4% |
| 3938669 | 5.1.4.14 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N | 0.55 | 49.0 | 3.16e-01 | 100.0% | 24.4% |
| 4029177 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 47.0 | 3.94e-01 | 100.0% | 93.5% |
| 5029037 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.54 | 46.0 | 3.73e-01 | 100.0% | 53.8% |
| 3482354 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.53 | 37.0 | 2.98e-01 | 74.7% | 42.3% |
| 5059491 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.53 | 36.0 | 2.68e-01 | 74.7% | 26.5% |
| 5081878 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 37.0 | 2.47e-01 | 80.0% | 15.8% |
| 3520182 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 42.0 | 2.90e-01 | 90.7% | 31.4% |
| 5037441 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 44.0 | 4.01e-01 | 100.0% | 97.3% |
| 3214115 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.52 | 44.0 | 2.94e-01 | 98.7% | 31.3% |
| 3968678 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.51 | 43.0 | 3.66e-01 | 100.0% | 75.7% |
| 4992338 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.51 | 40.0 | 3.63e-01 | 94.7% | 61.9% |
| 4958553 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.51 | 35.0 | 2.57e-01 | 73.3% | 33.6% |
| 4373611 | 4237.1.1.1 ↗ | beta barrels › FomD-like › FomD-like › FomD-like › DUF402 | 0.50 | 40.0 | 3.16e-01 | 90.7% | 82.3% |
D3
medium
residues 507-543
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ygiB01 | 1.10.4090.10 | Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus | 0.85 | 73.0 | 4.87e-01 | 100.0% | 25.3% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.84 | 69.0 | 4.90e-01 | 100.0% | 30.8% |
| 3w3sA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.83 | 53.0 | 2.99e-01 | 75.7% | 6.7% |
| 5jrcA00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 66.0 | 4.24e-01 | 100.0% | 19.9% |
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.78 | 66.0 | 6.20e-01 | 100.0% | 78.7% |
| 4toiA02 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.77 | 65.0 | 6.02e-01 | 97.3% | 100.0% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.77 | 63.0 | 5.90e-01 | 100.0% | 79.6% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.76 | 65.0 | 5.39e-01 | 100.0% | 58.2% |
| 2hh7A00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.76 | 65.0 | 5.04e-01 | 100.0% | 47.1% |
| 7ep3A01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.75 | 60.0 | 3.72e-01 | 100.0% | 32.6% |
| 5j1hA01 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 64.0 | 4.13e-01 | 100.0% | 36.8% |
| 2xkoC02 | 6.10.250.870 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.73 | 59.0 | 5.98e-01 | 97.3% | 97.3% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.71 | 56.0 | 4.47e-01 | 100.0% | 42.4% |
| 1uajA02 | 1.10.1270.20 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › tRNA(m1g37)methyltransferase, domain 2 | 0.71 | 57.0 | 4.60e-01 | 91.9% | 47.9% |
| 2wvxA04 | 1.20.1610.10 | Mainly Alpha › Up-down Bundle › Glycosyl hydrolase family fold › alpha-1,2-mannosidases domains | 0.70 | 58.0 | 3.84e-01 | 100.0% | 52.0% |
| 5je8B02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.69 | 60.0 | 4.14e-01 | 100.0% | 28.9% |
| 5lb3B02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 55.0 | 3.38e-01 | 94.6% | 14.5% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.68 | 60.0 | 4.88e-01 | 100.0% | 58.8% |
| 2khvA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.67 | 48.0 | 3.71e-01 | 78.4% | 85.9% |
| 7xpcA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 53.0 | 3.07e-01 | 94.6% | 10.1% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 55.0 | 4.90e-01 | 100.0% | 65.5% |
| 1hwyA01 | 1.10.287.140 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 47.0 | 4.27e-01 | 75.7% | 90.2% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.65 | 54.0 | 4.58e-01 | 100.0% | 98.5% |
| 3sllA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.61 | 51.0 | 4.38e-01 | 97.3% | 68.9% |
| 3qxzA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.60 | 49.0 | 4.25e-01 | 94.6% | 70.0% |
| 4i43B02 | 3.30.43.40 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain | 0.60 | 49.0 | 3.60e-01 | 97.3% | 46.5% |
| 2rfqB01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.59 | 51.0 | 3.62e-01 | 94.6% | 31.2% |
| 2jbrA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.55 | 45.0 | 3.30e-01 | 100.0% | 31.1% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3567672 | 4146.1.1.0 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like | 0.93 | 81.0 | 7.89e-01 | 97.3% | 90.0% |
| 3679373 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.85 | 71.0 | 6.00e-01 | 100.0% | 58.5% |
| 5058627 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.82 | 70.0 | 5.89e-01 | 100.0% | 56.9% |
| 4553862 | 4146.1.1.0 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like | 0.80 | 68.0 | 6.46e-01 | 100.0% | 82.2% |
| None | — | 0.79 | 67.0 | 4.15e-01 | 100.0% | 16.5% | |
| 4935885 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.79 | 65.0 | 3.81e-01 | 100.0% | 11.0% |
| 4273807 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.79 | 62.0 | 3.48e-01 | 100.0% | 8.0% |
| 4186632 | 4146.1.1.3 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › PKHD_C | 0.78 | 66.0 | 6.30e-01 | 100.0% | 82.2% |
| 2546344 | 3826.1.1.1 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Trns_repr_metal | 0.77 | 66.0 | 5.70e-01 | 100.0% | 66.7% |
| 4589741 | 10.12.1.145 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PKHD_C | 0.76 | 66.0 | 4.05e-01 | 100.0% | 16.4% |
| 3441516 | 109.3.1.11 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_5 | 0.75 | 64.0 | 3.72e-01 | 97.3% | 11.4% |
| 3575095 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.75 | 63.0 | 5.37e-01 | 100.0% | 78.5% |
| 4878100 | 616.1.1.2 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › WHEP-TRS | 0.74 | 61.0 | 5.95e-01 | 97.3% | 88.1% |
| 5075979 | 159.1.2.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related | 0.74 | 62.0 | 5.28e-01 | 100.0% | 72.3% |
| 3597537 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.74 | 59.0 | 3.35e-01 | 100.0% | 8.4% |
| 5040510 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.73 | 56.0 | 3.51e-01 | 100.0% | 15.5% |
| 3386373 | 605.1.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim | 0.72 | 62.0 | 5.22e-01 | 100.0% | 56.9% |
| 3403179 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.72 | 60.0 | 4.39e-01 | 97.3% | 35.2% |
| 2476070 | 616.1.1.3 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Flu_NS1 | 0.69 | 52.0 | 5.21e-01 | 100.0% | 100.0% |
| 4309485 | 4229.1.1.2 ↗ | alpha bundles › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Trp_dioxygenase | 0.68 | 56.0 | 3.23e-01 | 94.6% | 10.4% |