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S16_GE16_scaffold_5545_prodigal-single.1__X__X__00310

Bact-Vir

S16_GE16_scaffold_5545_prodigal-single.1__X__X__00310

Identity

Kingdom:
phage

Quality

94.7 mean pLDDT

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-119
PDB
Domain cluster: rep: SRR1747057_scaffold_1_prodigal-single.1__X__X__00036__D82-172
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3djmA00 2.170.150.40 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Domain of unknown function (DUF427) 0.66 55.0 5.66e-01 90.4% 94.6%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.64 39.0 4.63e-01 100.0% 92.2%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.63 33.0 3.89e-01 98.3% 73.3%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 30.0 4.11e-01 93.9% 98.2%
3u28C00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.59 33.0 3.66e-01 100.0% 67.4%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 30.0 3.82e-01 88.7% 93.9%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 32.0 3.68e-01 96.5% 91.4%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3958001 708.1.2.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.64 54.0 5.56e-01 92.2% 96.4%
3710481 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.60 34.0 3.81e-01 100.0% 70.0%
4945675 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.59 33.0 3.05e-01 94.8% 40.7%
3585492 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.59 38.0 3.91e-01 96.5% 67.3%