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S16_GE16_scaffold_5545_prodigal-single.1__X__X__00345
Bact-VirS16_GE16_scaffold_5545_prodigal-single.1__X__X__00345
Identity
- Kingdom:
- phage
Quality
88.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 68-120
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xe4A02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.68 | 53.0 | 3.25e-01 | 86.8% | 24.4% |
| 4ikcA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.64 | 49.0 | 3.09e-01 | 83.0% | 21.5% |
| 1e5tA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.61 | 50.0 | 3.04e-01 | 92.5% | 25.2% |
| 2bklA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.61 | 49.0 | 3.06e-01 | 92.5% | 25.7% |
| 1qwoA01 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.60 | 47.0 | 2.83e-01 | 86.8% | 97.7% |
| 3lm3A02 | 3.30.1120.110 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.60 | 49.0 | 3.95e-01 | 92.5% | 76.6% |
| 3u12A00 | 2.30.29.180 | Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain | 0.60 | 49.0 | 3.99e-01 | 92.5% | 78.8% |
| 3u4zA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 46.0 | 3.64e-01 | 84.9% | 53.2% |
| 1zo0A00 | 3.40.630.60 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.58 | 44.0 | 3.44e-01 | 84.9% | 62.7% |
| 4qunA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.58 | 43.0 | 2.76e-01 | 81.1% | 28.3% |
| 6a97C01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.56 | 39.0 | 2.95e-01 | 90.6% | 29.8% |
| 4ydzA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 42.0 | 3.24e-01 | 88.7% | 43.0% |
| 7essA01 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.55 | 44.0 | 3.33e-01 | 90.6% | 84.8% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.54 | 43.0 | 3.21e-01 | 84.9% | 71.8% |
| 2qmiA02 | 2.40.128.210 | Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain | 0.54 | 43.0 | 3.56e-01 | 90.6% | 76.0% |
| 6j9eJ00 | 3.30.160.560 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 42.0 | 3.97e-01 | 94.3% | 92.4% |
| 4ntqA00 | 3.10.380.20 | Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Novel toxin 21 (CdiA), C-terminal domain | 0.51 | 37.0 | 3.34e-01 | 90.6% | 55.3% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4965937 | 11.1.1.1419 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_arc | 0.66 | 58.0 | 4.89e-01 | 100.0% | 87.8% |
| 1832709 | 10.2.1.41 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_NCLDV | 0.65 | 43.0 | 4.21e-01 | 100.0% | 61.7% |
| 3564215 | 71.1.1.14 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › GPCR_chapero_1 | 0.65 | 49.0 | 3.26e-01 | 83.0% | 81.6% |
| 4187609 | 2.1.1.127 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 | 0.63 | 49.0 | 4.11e-01 | 86.8% | 63.2% |
| 3737620 | 5.1.5.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N | 0.63 | 51.0 | 2.97e-01 | 92.5% | 31.9% |
| 3576886 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.63 | 48.0 | 3.02e-01 | 84.9% | 38.7% |
| 4618920 | 2.1.1.127 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 | 0.62 | 48.0 | 3.68e-01 | 86.8% | 46.2% |
| 3952733 | 5.1.8.10 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › Peptidase_S9_N | 0.61 | 52.0 | 3.45e-01 | 98.1% | 36.4% |
| 5018282 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 48.0 | 3.02e-01 | 92.5% | 25.0% |
| 3590189 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.60 | 43.0 | 3.15e-01 | 79.2% | 88.1% |
| 3508758 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.60 | 46.0 | 3.81e-01 | 86.8% | 57.0% |
| 4256808 | 12.1.1.52 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GLGE_C | 0.60 | 41.0 | 4.39e-01 | 96.2% | 86.4% |
| 3992780 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.58 | 44.0 | 2.90e-01 | 84.9% | 30.9% |
| 3836411 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.58 | 41.0 | 4.03e-01 | 88.7% | 68.3% |
| 4546532 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.57 | 43.0 | 3.54e-01 | 84.9% | 56.2% |
| 3621133 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 43.0 | 2.76e-01 | 84.9% | 28.1% |
| 3286724 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 46.0 | 3.30e-01 | 92.5% | 92.5% |
| 4126006 | 325.1.7.14 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RPOC_hybrid | 0.56 | 38.0 | 3.64e-01 | 73.6% | 84.6% |
| 4932472 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.54 | 43.0 | 3.69e-01 | 94.3% | 52.6% |
| 3597091 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.54 | 42.0 | 3.20e-01 | 84.9% | 78.2% |
| 4064214 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.53 | 36.0 | 3.46e-01 | 71.7% | 81.5% |
| 3191149 | 5.1.7.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 | 0.53 | 44.0 | 2.60e-01 | 100.0% | 26.5% |
| 3504386 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.53 | 43.0 | 4.06e-01 | 98.1% | 87.1% |
| 4939095 | 319.1.1.4 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 | 0.53 | 39.0 | 3.64e-01 | 90.6% | 61.3% |
| 3399963 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.53 | 38.0 | 3.16e-01 | 86.8% | 55.8% |
| 5049530 | 319.1.1.23 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 | 0.51 | 39.0 | 3.43e-01 | 90.6% | 55.6% |
D2
medium
residues 1-64
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23886.2 best | DUF7239 | 36.1 | 9.20e-09 | 95.3% | 43.8% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mk7C01 | 6.10.280.130 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 47.0 | 4.11e-01 | 79.7% | 55.3% |
| 3i3lA02 | 3.30.390.160 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.60 | 43.0 | 3.49e-01 | 76.6% | 92.8% |
| 7sk7A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.59 | 53.0 | 3.51e-01 | 100.0% | 63.6% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.57 | 49.0 | 3.24e-01 | 92.2% | 67.8% |
| 4q8gA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 38.0 | 2.36e-01 | 73.4% | 32.3% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4965624 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.75 | 53.0 | 3.49e-01 | 75.0% | 80.3% |
| 4980789 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.68 | 45.0 | 2.73e-01 | 92.2% | 10.6% |
| 3838596 | 2008.1.1.85 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII | 0.66 | 50.0 | 3.48e-01 | 81.2% | 73.7% |
| 3940752 | 5001.1.1.60 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx | 0.66 | 59.0 | 3.78e-01 | 98.4% | 57.0% |
| 4987009 | 3837.1.1.1 ↗ | alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 | 0.65 | 49.0 | 3.69e-01 | 79.7% | 78.7% |
| 3702909 | 6166.1.1.1 ↗ | alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 | 0.65 | 47.0 | 3.26e-01 | 76.6% | 23.0% |
| 3497680 | 5054.1.1.63 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, YVC1_C | 0.64 | 52.0 | 3.23e-01 | 89.1% | 70.0% |
| 5066729 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.58 | 49.0 | 4.44e-01 | 95.3% | 87.8% |
| 3407160 | 4970.1.1.2 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A | 0.58 | 49.0 | 3.71e-01 | 93.8% | 65.3% |
| 4971607 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.55 | 43.0 | 2.64e-01 | 92.2% | 50.0% |
| 3641171 | 3016.1.1.12 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Alliinase_C | 0.54 | 38.0 | 3.01e-01 | 73.4% | 91.7% |
| 3421312 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.51 | 41.0 | 4.02e-01 | 98.4% | 78.6% |