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S16_GE16_scaffold_5545_prodigal-single.1__X__X__00361

Bact-Vir

S16_GE16_scaffold_5545_prodigal-single.1__X__X__00361

Identity

Kingdom:
phage

Quality

78.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 75-153
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.65 27.0 3.34e-01 82.3% 56.0%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 37.0 3.80e-01 100.0% 60.0%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.57 26.0 3.18e-01 81.0% 63.0%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 34.0 3.71e-01 100.0% 75.8%
2cg7A02 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.56 25.0 3.17e-01 82.3% 70.5%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.54 33.0 2.78e-01 100.0% 34.5%
7r0kA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.54 38.0 3.03e-01 74.7% 70.5%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 37.0 2.51e-01 73.4% 49.7%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 31.0 3.37e-01 100.0% 74.2%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
8551 391.1.1.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.62 27.0 3.22e-01 82.3% 56.0%
3174995 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.55 38.0 3.43e-01 97.5% 51.8%
3863804 5.1.4.17 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A,MMS1_N 0.54 41.0 2.36e-01 81.0% 25.8%
1309460 3338.1.1.1 ↗ a+b two layers › Fragilysin-3 prodomain-like › Fragilysin-3 prodomain › Fragilysin-3 prodomain › fragilysinNterm 0.54 33.0 2.76e-01 100.0% 33.6%
3715083 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.54 40.0 2.66e-01 77.2% 95.9%
4010863 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.53 45.0 3.18e-01 98.7% 80.4%
3512937 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.51 35.0 2.94e-01 98.7% 39.9%
D2 medium residues 1-74
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ezvC00 1.20.810.10 Mainly Alpha › Up-down Bundle › Cytochrome Bc1 Complex; Chain C › Cytochrome Bc1 Complex; Chain C 0.78 65.0 4.00e-01 87.8% 49.9%
3m6jA01 1.20.1260.40 Mainly Alpha › Up-down Bundle › Ferritin › 0.75 52.0 4.42e-01 74.3% 45.3%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.75 60.0 5.57e-01 85.1% 76.9%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.74 56.0 4.39e-01 79.7% 45.8%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.73 52.0 4.05e-01 73.0% 52.0%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.69 45.0 4.56e-01 70.3% 67.6%
4gyvE00 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.60 51.0 3.70e-01 95.9% 87.0%
7k3zG01 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.55 45.0 3.24e-01 89.2% 46.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3996264 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.79 57.0 4.22e-01 74.3% 81.2%
3710098 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.79 57.0 4.67e-01 74.3% 66.4%
3510098 5069.1.1.7 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.78 58.0 4.27e-01 77.0% 42.3%
3864054 192.10.1.0 ↗ alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.78 54.0 4.50e-01 73.0% 83.2%
4983057 4163.1.1.0 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.74 58.0 5.19e-01 82.4% 73.0%
3266812 3291.1.1.211 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › EMC3_TMCO1 0.73 58.0 4.38e-01 82.4% 74.4%
3504305 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.73 52.0 4.59e-01 74.3% 69.5%
5072726 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.73 52.0 5.27e-01 83.8% 74.7%
3218730 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.70 46.0 4.62e-01 74.3% 66.7%
3669567 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 52.0 3.81e-01 82.4% 42.6%
3424167 3826.1.1.84 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF7797 0.67 51.0 4.99e-01 83.8% 76.2%
4953267 632.11.1.19 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF2096_N 0.60 48.0 4.35e-01 87.8% 76.0%