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S20_GE20_scaffold_13766_prodigal-single.1__X__X__00013

Bact-Vir

S20_GE20_scaffold_13766_prodigal-single.1__X__X__00013

Identity

Kingdom:
phage

Quality

77.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-156
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2essA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.68 26.0 3.18e-01 70.3% 52.5%
3s4kA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.66 27.0 2.92e-01 70.3% 44.4%
3dkzA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.65 26.0 2.84e-01 70.3% 43.2%
5l09B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.58 43.0 4.15e-01 77.2% 98.8%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.56 34.0 4.18e-01 70.3% 97.8%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.55 34.0 4.12e-01 77.2% 91.8%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.53 30.0 3.66e-01 85.5% 90.7%
3holA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.52 36.0 3.49e-01 71.0% 90.4%
4bwiB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 42.0 3.87e-01 88.3% 92.2%
3v8uA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.51 36.0 3.36e-01 71.0% 94.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4139128 222.1.1.27 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 0.71 27.0 2.94e-01 71.0% 41.6%
3406485 1181.1.1.0 ↗ 0.63 23.0 3.30e-01 71.0% 68.6%
3740081 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.58 29.0 3.39e-01 70.3% 65.5%
3514856 1181.1.1.0 ↗ 0.55 23.0 3.14e-01 71.0% 74.7%
4340836 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.54 28.0 3.76e-01 82.1% 100.0%
5004871 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.53 30.0 3.62e-01 80.7% 86.7%
4024649 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.53 31.0 3.70e-01 87.6% 90.0%
4009014 223.1.1.35 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.52 40.0 3.65e-01 82.1% 74.1%
4927614 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 28.0 3.18e-01 70.3% 67.3%
3504843 244.2.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rbx_binding 0.51 25.0 3.57e-01 79.3% 100.0%
4085391 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.50 36.0 3.39e-01 74.5% 80.3%
3783790 220.1.1.69 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Meiotic_rec114 0.50 32.0 3.47e-01 70.3% 76.7%
4928263 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 24.0 2.71e-01 93.1% 55.5%