←Back to structures

S20_GE20_scaffold_13766_prodigal-single.1__X__X__00025

Bact-Vir

S20_GE20_scaffold_13766_prodigal-single.1__X__X__00025

Identity

Kingdom:
phage

Quality

91.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-44_46-55
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mwpB02 3.30.420.410 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Arenaviral nucleoprotein, C-terminal domain 0.77 65.0 4.38e-01 100.0% 26.0%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.76 53.0 3.66e-01 72.9% 38.3%
4okeA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.75 65.0 4.54e-01 100.0% 30.0%
3mjgX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 55.0 4.36e-01 83.3% 69.3%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.71 46.0 2.75e-01 87.5% 10.1%
1lgpA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.70 49.0 3.77e-01 75.0% 40.7%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.69 49.0 4.99e-01 77.1% 77.1%
3lzwA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 42.0 3.21e-01 72.9% 25.2%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.67 60.0 3.81e-01 100.0% 70.8%
2zbwA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 42.0 3.16e-01 72.9% 24.4%
4dolA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.66 48.0 3.32e-01 77.1% 50.0%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.66 50.0 3.02e-01 81.2% 14.4%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.66 48.0 4.07e-01 79.2% 48.1%
4makB00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 46.0 3.94e-01 75.0% 97.4%
4bs9A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 48.0 3.17e-01 81.2% 56.6%
3e0jA01 3.60.21.50 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › 0.65 45.0 2.76e-01 72.9% 80.3%
3pihA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 44.0 3.84e-01 72.9% 73.6%
3f8dA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 41.0 3.10e-01 72.9% 24.4%
2py5A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 56.0 3.71e-01 97.9% 77.2%
5cz2C00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 43.0 3.00e-01 75.0% 23.0%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.61 35.0 3.62e-01 70.8% 56.5%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.61 49.0 3.71e-01 100.0% 36.3%
1nnwB00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.61 49.0 3.24e-01 100.0% 98.8%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 45.0 3.72e-01 83.3% 68.8%
1r17B01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 46.0 3.21e-01 83.3% 86.4%
7e52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 39.0 2.95e-01 75.0% 25.0%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.60 43.0 3.28e-01 81.2% 28.9%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 36.0 3.33e-01 72.9% 40.6%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 41.0 3.94e-01 79.2% 59.3%
2pm9A02 2.20.25.400 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 34.0 3.88e-01 70.8% 86.7%
1fl2A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 38.0 2.93e-01 72.9% 25.0%
4frfA00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.58 48.0 3.24e-01 97.9% 66.4%
1qz8A01 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.58 41.0 3.21e-01 75.0% 66.7%
4eqvA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.58 47.0 3.35e-01 97.9% 68.8%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 41.0 3.12e-01 77.1% 35.7%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.56 49.0 3.35e-01 100.0% 81.7%
3fetA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 36.0 2.51e-01 72.9% 18.2%
7arcC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.55 46.0 3.37e-01 95.8% 48.9%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.55 42.0 3.26e-01 93.8% 36.3%
7qzqA01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.55 45.0 2.69e-01 89.6% 21.6%
7xoiD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 41.0 3.28e-01 100.0% 38.3%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 2.89e-01 79.2% 30.5%
1vw3B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 35.0 2.88e-01 70.8% 34.4%
2fe0A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 44.0 3.46e-01 93.8% 84.1%
4jonC00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 44.0 3.37e-01 95.8% 61.9%
1st8A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.54 41.0 2.95e-01 97.9% 65.3%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 47.0 2.81e-01 100.0% 20.0%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 33.0 3.21e-01 72.9% 47.4%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.67e-01 95.8% 17.2%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.51 34.0 2.36e-01 70.8% 19.9%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4290521 2484.1.1.91 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Exu_RNase_H_like 0.88 75.0 4.60e-01 100.0% 17.0%
1866795 2484.1.1.91 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Exu_RNase_H_like 0.87 75.0 4.68e-01 100.0% 19.7%
3706908 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.83 73.0 4.46e-01 100.0% 17.1%
3484776 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.82 49.0 3.58e-01 79.2% 24.2%
3599368 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.81 70.0 4.42e-01 100.0% 22.0%
4928233 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.77 51.0 3.60e-01 85.4% 23.6%
3944564 3735.1.1.14 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell 0.76 55.0 2.99e-01 83.3% 4.4%
1124583 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.76 53.0 3.66e-01 72.9% 38.3%
3962916 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.76 66.0 4.65e-01 100.0% 31.4%
4517523 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.74 47.0 3.63e-01 83.3% 31.0%
1149730 2484.1.1.78 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Arena_ncap_C 0.74 46.0 4.50e-01 70.8% 57.7%
3635699 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.73 50.0 3.85e-01 72.9% 44.5%
4009489 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.72 51.0 3.52e-01 75.0% 38.1%
3428282 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.71 49.0 3.01e-01 72.9% 25.4%
5045622 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.70 49.0 2.96e-01 75.0% 97.9%
4207211 511.1.1.1 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 0.67 48.0 3.35e-01 79.2% 23.9%
3463266 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.65 47.0 4.37e-01 77.1% 65.0%
3413048 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.65 43.0 2.45e-01 72.9% 6.6%
3501741 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.65 44.0 4.12e-01 72.9% 56.7%
3512466 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 47.0 3.42e-01 77.1% 31.2%
5047406 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.64 45.0 2.96e-01 75.0% 17.3%
3468940 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.64 46.0 2.77e-01 79.2% 10.7%
3882464 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 52.0 4.49e-01 89.6% 62.7%
3465348 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 46.0 2.88e-01 79.2% 14.0%
3204926 4099.1.1.3 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.64 44.0 3.90e-01 75.0% 47.1%
3566614 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 54.0 4.10e-01 100.0% 70.4%
4245082 304.102.1.1 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.64 51.0 3.31e-01 89.6% 63.0%
4963635 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.63 41.0 3.63e-01 70.8% 46.4%
4001973 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 45.0 3.24e-01 75.0% 27.7%
4009943 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.63 48.0 3.58e-01 93.8% 32.8%
4927267 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.61 40.0 4.09e-01 72.9% 68.9%
3992334 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 44.0 2.67e-01 93.8% 12.1%
3405271 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.61 43.0 2.72e-01 75.0% 20.0%
3563753 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.60 51.0 3.87e-01 100.0% 67.2%
5035305 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 49.0 4.16e-01 93.8% 56.2%
3220575 206.1.2.3 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › IPK 0.58 48.0 2.99e-01 97.9% 43.5%
3486078 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 43.0 2.56e-01 79.2% 10.8%
3550161 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 45.0 3.49e-01 100.0% 79.7%
4030437 206.1.2.3 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › IPK 0.57 47.0 3.10e-01 97.9% 63.5%
2971233 4056.1.1.2 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_connector 0.57 38.0 3.41e-01 77.1% 45.8%
3858967 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.56 36.0 3.95e-01 75.0% 100.0%
3213905 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 37.0 2.54e-01 75.0% 16.1%
3248039 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 39.0 3.05e-01 72.9% 40.0%
3626984 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 37.0 2.45e-01 75.0% 15.7%
5043415 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 48.0 3.59e-01 100.0% 86.7%
3932473 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 2.61e-01 89.6% 13.8%
3392691 391.1.2.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.55 42.0 3.16e-01 87.5% 39.5%
3197352 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 43.0 3.63e-01 95.8% 98.9%
3992928 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.54 45.0 3.42e-01 95.8% 63.3%
5058926 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.54 37.0 3.27e-01 72.9% 46.7%
3568886 2492.1.1.29 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC4_like 0.54 41.0 2.84e-01 93.8% 87.9%
3617389 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.52 40.0 2.44e-01 97.9% 72.4%
4030855 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.51 38.0 2.34e-01 81.2% 44.4%
None — 0.50 35.0 2.11e-01 79.2% 44.6%
None — 0.50 35.0 2.12e-01 79.2% 48.0%