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S20_GE20_scaffold_13766_prodigal-single.1__X__X__00059

Bact-Vir

S20_GE20_scaffold_13766_prodigal-single.1__X__X__00059

Identity

Kingdom:
phage

Quality

43.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-165
PDB
D2 medium residues 3-39
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.71 59.0 4.25e-01 100.0% 32.7%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.67 53.0 4.54e-01 100.0% 53.7%
1vs5D02 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.60 48.0 3.76e-01 100.0% 42.6%
2e5aA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 39.0 2.43e-01 75.7% 19.5%
7lzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.37e-01 100.0% 51.1%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.55 44.0 3.43e-01 97.3% 89.1%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 37.0 2.73e-01 75.7% 70.6%
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.53 39.0 3.20e-01 100.0% 41.4%
2gaxA00 3.40.1490.10 Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 0.53 41.0 2.93e-01 91.9% 79.9%
3w1eA01 3.30.1660.40 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › FlgT, N-terminal domain 0.53 39.0 3.30e-01 100.0% 63.3%
5dn7A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 41.0 2.56e-01 94.6% 14.6%
2yzkA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 37.0 2.57e-01 94.6% 92.6%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.51 35.0 2.90e-01 73.0% 66.2%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.51 39.0 3.57e-01 91.9% 64.3%
2qxfA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 38.0 2.57e-01 89.2% 35.9%
6p2uA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.50 39.0 3.64e-01 94.6% 69.2%
2af6A01 3.30.70.3180 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 42.0 2.95e-01 100.0% 37.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3956825 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.95 89.0 7.90e-01 100.0% 74.0%
3951879 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.94 88.0 7.79e-01 100.0% 74.0%
5009673 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 3.65e-01 100.0% 23.0%
3618864 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.62 47.0 2.91e-01 83.8% 76.0%
4945998 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 4.03e-01 100.0% 54.7%
3250268 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 39.0 2.44e-01 70.3% 38.6%
4028109 3525.1.1.0 ↗ alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain 0.56 44.0 3.78e-01 91.9% 53.8%
10173 2011.1.1.11 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M42 0.55 39.0 3.37e-01 78.4% 68.8%
3184929 2004.11.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP 0.55 39.0 2.50e-01 78.4% 14.0%
3392481 109.4.1.1434 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRAPPC9-Trs120, PF26251 0.53 41.0 2.35e-01 89.2% 57.4%
3590899 2007.1.2.11 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 0.53 38.0 2.52e-01 94.6% 16.8%
4029491 3781.1.1.0 ↗ a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain 0.53 36.0 3.35e-01 70.3% 66.0%
3499575 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 41.0 3.31e-01 86.5% 45.2%
3940051 2004.1.1.176 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Beta-Casp 0.53 37.0 2.34e-01 83.8% 38.5%
3410491 109.4.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G 0.53 42.0 2.59e-01 91.9% 33.5%
3721862 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 2.96e-01 91.9% 60.0%
3181087 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 39.0 3.48e-01 100.0% 56.9%
4523274 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.50 42.0 2.73e-01 100.0% 34.4%
D3 medium residues 205-271
PDB
D4 medium residues 394-492
PDB