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S20_GE20_scaffold_13766_prodigal-single.1__X__X__00119
Bact-VirS20_GE20_scaffold_13766_prodigal-single.1__X__X__00119
Identity
- Kingdom:
- phage
Quality
76.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-62
D2
high
residues 72-147
Domain cluster:
representative
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pmlX01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.71 | 49.0 | 4.12e-01 | 71.1% | 92.7% |
| 3fo5B00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.68 | 47.0 | 3.31e-01 | 72.4% | 71.2% |
| 6j5tB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.67 | 47.0 | 4.00e-01 | 72.4% | 79.2% |
| 4fr9A00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 46.0 | 3.78e-01 | 72.4% | 53.2% |
| 3doaA01 | 2.30.310.10 | Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain | 0.67 | 45.0 | 3.61e-01 | 71.1% | 37.3% |
| 1yemB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.64 | 55.0 | 4.31e-01 | 97.4% | 87.3% |
| 1wmiA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.63 | 49.0 | 4.73e-01 | 84.2% | 87.5% |
| 2fblB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.62 | 54.0 | 4.36e-01 | 97.4% | 84.5% |
| 1e5tA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.62 | 44.0 | 2.87e-01 | 75.0% | 66.9% |
| 2kd2A01 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.62 | 43.0 | 4.19e-01 | 72.4% | 89.3% |
| 2aaaA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.61 | 43.0 | 3.88e-01 | 73.7% | 92.2% |
| 2jkbA02 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.60 | 44.0 | 2.83e-01 | 78.9% | 15.9% |
| 2acaA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.60 | 50.0 | 3.98e-01 | 97.4% | 86.8% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.60 | 45.0 | 3.73e-01 | 80.3% | 72.1% |
| 1vyfA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.60 | 44.0 | 3.69e-01 | 78.9% | 81.5% |
| 1ge8A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.59 | 41.0 | 2.97e-01 | 73.7% | 94.5% |
| 5kvsA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.59 | 46.0 | 3.61e-01 | 82.9% | 50.6% |
| 6fopA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.59 | 48.0 | 3.43e-01 | 88.2% | 54.4% |
| 1orvA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.59 | 49.0 | 3.00e-01 | 90.8% | 95.1% |
| 2jkgA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.59 | 44.0 | 3.53e-01 | 82.9% | 78.2% |
| 1mdcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 45.0 | 3.76e-01 | 81.6% | 84.0% |
| 5b0hA00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.58 | 48.0 | 4.08e-01 | 93.4% | 74.4% |
| 5upiA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.58 | 46.0 | 3.47e-01 | 86.8% | 69.7% |
| 1cgtA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.58 | 42.0 | 3.93e-01 | 76.3% | 100.0% |
| 1o8vA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 41.0 | 3.49e-01 | 77.6% | 83.5% |
| 3w9kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 48.0 | 4.05e-01 | 96.1% | 81.5% |
| 2zf8A01 | 2.60.40.2540 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 41.0 | 3.30e-01 | 77.6% | 81.2% |
| 4i8oA02 | 3.30.160.690 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain | 0.56 | 48.0 | 4.61e-01 | 97.4% | 86.7% |
| 1vr8A00 | 3.40.1000.20 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like | 0.56 | 44.0 | 3.65e-01 | 85.5% | 88.1% |
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.55 | 48.0 | 4.21e-01 | 98.7% | 70.4% |
| 3e8vA00 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.55 | 39.0 | 3.89e-01 | 76.3% | 93.9% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.54 | 48.0 | 3.35e-01 | 100.0% | 71.1% |
| 7szeB02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.54 | 47.0 | 3.54e-01 | 96.1% | 71.2% |
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.54 | 39.0 | 3.40e-01 | 77.6% | 85.8% |
| 2xqyA01 | 3.30.500.50 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.53 | 35.0 | 2.76e-01 | 81.6% | 29.2% |
| 2r5vA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 39.0 | 3.20e-01 | 80.3% | 50.0% |
| 2mqdA00 | 3.30.1460.60 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.53 | 40.0 | 3.50e-01 | 82.9% | 66.4% |
| 2v7sA00 | 3.30.2030.20 | Alpha Beta › 2-Layer Sandwich › TBP-like › | 0.53 | 41.0 | 3.25e-01 | 86.8% | 72.2% |
| 1e2tA03 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.53 | 40.0 | 3.47e-01 | 81.6% | 73.5% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.52 | 39.0 | 3.35e-01 | 78.9% | 87.5% |
| 2ix2B00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.52 | 39.0 | 2.89e-01 | 85.5% | 91.8% |
| 3njcA00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.52 | 39.0 | 3.18e-01 | 81.6% | 64.1% |
| 3nvoA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.52 | 45.0 | 3.79e-01 | 97.4% | 84.0% |
| 2ffsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 43.0 | 3.53e-01 | 93.4% | 88.3% |
| 6yfiB01 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.51 | 39.0 | 3.33e-01 | 84.2% | 90.4% |
| 1tluA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.51 | 44.0 | 3.83e-01 | 97.4% | 71.8% |
| 5tvfD00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.51 | 44.0 | 3.08e-01 | 98.7% | 70.0% |
| 1ealA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 39.0 | 3.37e-01 | 85.5% | 96.1% |
| 2rcqA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 38.0 | 3.17e-01 | 82.9% | 88.7% |
| 1mpgA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.50 | 43.0 | 3.85e-01 | 100.0% | 97.3% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3612513 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.70 | 46.0 | 2.92e-01 | 72.4% | 14.0% |
| 3468807 | 5.1.3.65 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 | 0.68 | 52.0 | 3.30e-01 | 82.9% | 17.5% |
| 3252765 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.67 | 50.0 | 4.15e-01 | 80.3% | 74.1% |
| 5014687 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.66 | 47.0 | 5.00e-01 | 75.0% | 86.2% |
| 3457086 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.66 | 49.0 | 3.33e-01 | 78.9% | 50.2% |
| 4228206 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.65 | 50.0 | 4.93e-01 | 81.6% | 98.8% |
| 3463667 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.64 | 51.0 | 3.30e-01 | 85.5% | 91.5% |
| 3222106 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.64 | 48.0 | 4.17e-01 | 81.6% | 76.7% |
| 5012336 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.63 | 54.0 | 4.22e-01 | 97.4% | 84.4% |
| 3186460 | 708.1.2.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › NTP_transf_9 | 0.63 | 51.0 | 4.59e-01 | 93.4% | 64.8% |
| 3388479 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 44.0 | 2.82e-01 | 75.0% | 15.1% |
| 3168452 | 331.10.2.3 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › Med1 | 0.62 | 48.0 | 4.36e-01 | 84.2% | 94.3% |
| 1105421 | 12.1.1.14 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › A_amylase_dom_C | 0.62 | 43.0 | 3.94e-01 | 71.1% | 95.8% |
| 3793430 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.62 | 47.0 | 4.41e-01 | 82.9% | 78.9% |
| 3839891 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.60 | 49.0 | 4.55e-01 | 93.4% | 88.0% |
| 3738183 | 4099.1.1.10 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 | 0.60 | 48.0 | 4.10e-01 | 86.8% | 77.6% |
| 4964119 | 300.1.1.18 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle | 0.60 | 45.0 | 3.62e-01 | 82.9% | 81.9% |
| None | — | 0.60 | 47.0 | 3.11e-01 | 85.5% | 91.1% | |
| 3820829 | 5.1.5.66 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 | 0.59 | 47.0 | 3.12e-01 | 85.5% | 83.9% |
| 3387958 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.59 | 51.0 | 4.09e-01 | 97.4% | 83.9% |
| 5047554 | 241.1.1.5 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2299 | 0.59 | 43.0 | 3.44e-01 | 76.3% | 86.7% |
| 4975323 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.59 | 50.0 | 4.78e-01 | 100.0% | 83.3% |
| 2581425 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.59 | 37.0 | 4.23e-01 | 72.4% | 89.1% |
| 4390303 | 5.1.3.238 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 | 0.58 | 46.0 | 2.74e-01 | 85.5% | 24.2% |
| 5004871 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.58 | 50.0 | 4.80e-01 | 97.4% | 93.3% |
| None | — | 0.58 | 49.0 | 3.13e-01 | 97.4% | 20.0% | |
| 4122018 | 4099.1.1.10 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 | 0.58 | 46.0 | 4.24e-01 | 88.2% | 96.0% |
| 5007357 | 3435.1.1.10 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › PF27341 | 0.58 | 49.0 | 3.59e-01 | 98.7% | 35.6% |
| 3691378 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 41.0 | 2.67e-01 | 80.3% | 15.0% |
| 4023269 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.57 | 46.0 | 4.08e-01 | 88.2% | 93.6% |
| 3492352 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.57 | 42.0 | 3.82e-01 | 78.9% | 90.5% |
| 5004346 | 331.19.1.0 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains | 0.57 | 43.0 | 4.19e-01 | 81.6% | 74.1% |
| 4027011 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 42.0 | 2.83e-01 | 80.3% | 23.0% |
| 4991274 | 218.4.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 | 0.56 | 40.0 | 3.81e-01 | 77.6% | 96.8% |
| 3259661 | 331.23.1.9 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › RnlA_toxin | 0.56 | 37.0 | 3.91e-01 | 76.3% | 74.3% |
| 2755883 | 331.19.1.1 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin | 0.56 | 49.0 | 4.61e-01 | 97.4% | 84.8% |
| 4297071 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.55 | 39.0 | 3.93e-01 | 73.7% | 74.7% |
| 4768813 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.54 | 48.0 | 3.48e-01 | 100.0% | 82.9% |
| 3276429 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.54 | 43.0 | 2.87e-01 | 86.8% | 95.2% |
| 4991675 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.54 | 37.0 | 3.24e-01 | 72.4% | 100.0% |
| 4517015 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.54 | 37.0 | 3.22e-01 | 72.4% | 100.0% |
| 3630423 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.54 | 42.0 | 4.07e-01 | 84.2% | 85.9% |
| 3822070 | 331.10.2.8 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › SAM_decarbox | 0.53 | 46.0 | 4.05e-01 | 97.4% | 80.0% |
| 3991383 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.53 | 42.0 | 3.98e-01 | 86.8% | 75.6% |
| 184922 | 3513.1.1.2 ↗ | a+b two layers › Putative lipoprotein LppA › Putative lipoprotein LppA › Putative lipoprotein LppA › LppA | 0.53 | 41.0 | 3.25e-01 | 86.8% | 72.2% |
| 3467367 | 708.1.1.7 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut | 0.52 | 36.0 | 4.01e-01 | 75.0% | 93.3% |
| 5051699 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.52 | 45.0 | 4.02e-01 | 98.7% | 77.3% |
| 3428544 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.52 | 40.0 | 3.44e-01 | 82.9% | 60.0% |
| 3230925 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.51 | 35.0 | 3.05e-01 | 72.4% | 100.0% |
| 4929645 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.51 | 35.0 | 3.05e-01 | 71.1% | 99.2% |
| 4216985 | 331.19.1.2 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin_N | 0.51 | 42.0 | 4.12e-01 | 92.1% | 90.6% |
| 3657329 | 6.1.1.25 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › DUF569 | 0.51 | 36.0 | 2.93e-01 | 75.0% | 45.2% |
| 4941929 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.50 | 37.0 | 3.19e-01 | 80.3% | 98.4% |
D3
high
residues 170-310
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05673.20 best | DUF815 | 35.5 | 8.40e-09 | 90.8% | 38.6% |
| PF00004.36 | AAA | 45.7 | 1.20e-11 | 77.3% | 95.4% |
| PF00910.29 | RNA_helicase | 29.0 | 1.80e-06 | 70.2% | 75.2% |
D4
high
residues 316-376
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3uk6A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.74 | 56.0 | 5.06e-01 | 82.0% | 67.5% |
| 2c9oB03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.73 | 55.0 | 5.02e-01 | 83.6% | 66.3% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.66 | 55.0 | 4.99e-01 | 98.4% | 93.2% |
| 4yosA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 51.0 | 3.89e-01 | 91.8% | 84.4% |
| 1twfA05 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.64 | 49.0 | 3.76e-01 | 86.9% | 95.4% |
| 4h8aB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.62 | 47.0 | 4.73e-01 | 83.6% | 98.3% |
| 4gmqA00 | 1.10.8.840 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain | 0.62 | 47.0 | 4.23e-01 | 86.9% | 85.9% |
| 2xb1A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 46.0 | 4.06e-01 | 83.6% | 81.2% |
| 6h7bA01 | 1.10.1900.10 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein | 0.61 | 49.0 | 4.67e-01 | 93.4% | 83.8% |
| 2uvgA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.60 | 53.0 | 3.61e-01 | 100.0% | 98.7% |
| 3zwbA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.56 | 48.0 | 3.17e-01 | 100.0% | 52.7% |
| 2lfwA01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.56 | 42.0 | 3.39e-01 | 88.5% | 48.9% |
| 1w9cA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.54 | 46.0 | 2.95e-01 | 100.0% | 43.9% |
| 1x4qA01 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.54 | 38.0 | 3.70e-01 | 75.4% | 71.8% |
| 4m85C00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 38.0 | 2.84e-01 | 80.3% | 45.4% |
| 2aw6A02 | 1.25.40.400 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 42.0 | 2.97e-01 | 95.1% | 50.7% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3519328 | 148.1.3.18 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C | 0.69 | 53.0 | 4.61e-01 | 83.6% | 61.1% |
| 5060146 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.69 | 50.0 | 4.94e-01 | 78.7% | 98.5% |
| 4374427 | 148.1.3.18 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C | 0.68 | 54.0 | 5.03e-01 | 91.8% | 91.6% |
| 5016654 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.67 | 49.0 | 4.87e-01 | 80.3% | 100.0% |
| 5069176 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.66 | 48.0 | 4.64e-01 | 78.7% | 91.4% |
| 3578821 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.66 | 51.0 | 4.75e-01 | 86.9% | 72.5% |
| 3706047 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.65 | 51.0 | 5.26e-01 | 88.5% | 98.2% |
| 5030654 | 5073.1.1.11 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C | 0.63 | 53.0 | 3.15e-01 | 100.0% | 21.6% |
| 4986629 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.59 | 49.0 | 3.31e-01 | 98.4% | 96.4% |
| 5078343 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.59 | 43.0 | 4.27e-01 | 80.3% | 81.2% |
| 5064982 | 3290.1.1.1 ↗ | alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › FeoB_Cyto | 0.52 | 46.0 | 4.19e-01 | 100.0% | 95.0% |