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S20_GE20_scaffold_13766_prodigal-single.1__X__X__00123

Bact-Vir

S20_GE20_scaffold_13766_prodigal-single.1__X__X__00123

Identity

Kingdom:
phage

Quality

93.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-111_211-223
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.55 24.0 2.94e-01 75.0% 62.8%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3631695 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.56 43.0 2.70e-01 81.5% 64.1%
D2 medium residues 112-210
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 42.0 5.11e-01 76.8% 87.3%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 40.0 5.04e-01 75.8% 91.5%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 41.0 5.25e-01 83.8% 100.0%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 43.0 5.33e-01 80.8% 98.4%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 37.0 4.95e-01 93.9% 98.1%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 35.0 4.90e-01 87.9% 100.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 40.0 5.17e-01 77.8% 100.0%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.69 54.0 4.97e-01 100.0% 65.6%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 39.0 4.76e-01 78.8% 86.4%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 33.0 4.66e-01 84.8% 100.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 41.0 4.77e-01 90.9% 84.9%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.66 60.0 4.58e-01 98.0% 50.2%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 40.0 4.01e-01 78.8% 60.0%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 53.0 4.72e-01 100.0% 61.7%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 39.0 4.76e-01 77.8% 92.3%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 5.33e-01 83.8% 94.0%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.63 45.0 4.62e-01 81.8% 76.3%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 38.0 4.38e-01 87.9% 88.4%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.61 39.0 3.82e-01 75.8% 58.7%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.61e-01 81.8% 85.5%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 40.0 4.18e-01 85.9% 71.7%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.61 44.0 4.43e-01 98.0% 74.5%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 39.0 4.60e-01 92.9% 100.0%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.59 43.0 4.43e-01 77.8% 100.0%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 40.0 3.76e-01 70.7% 96.7%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 40.0 3.95e-01 84.8% 67.0%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 43.0 3.89e-01 80.8% 79.0%
2lktA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.57 44.0 4.15e-01 87.9% 66.4%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.57 42.0 3.82e-01 78.8% 88.5%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.57 38.0 3.65e-01 94.9% 59.8%
3h6qA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 40.0 3.42e-01 77.8% 99.4%
2l5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 44.0 3.73e-01 88.9% 74.3%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 37.0 3.22e-01 70.7% 98.7%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 37.0 3.56e-01 71.7% 84.2%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 3.73e-01 83.8% 68.8%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.53 37.0 3.66e-01 73.7% 95.4%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 3.85e-01 83.8% 81.9%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 36.0 3.67e-01 70.7% 98.0%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 40.0 3.60e-01 82.8% 76.8%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.52 38.0 3.61e-01 77.8% 90.2%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.46e-01 88.9% 83.5%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.50 45.0 4.35e-01 98.0% 88.5%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.50 43.0 3.49e-01 96.0% 88.7%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3485965 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 44.0 5.55e-01 78.8% 93.3%
4422251 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.76 39.0 5.34e-01 74.7% 100.0%
3875218 4.1.1.128 beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.75 41.0 4.97e-01 74.7% 81.5%
4191690 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.75 42.0 5.39e-01 83.8% 94.8%
4177200 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.74 41.0 5.38e-01 75.8% 98.2%
3914746 4.1.1.128 beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.74 42.0 4.90e-01 76.8% 78.6%
4084190 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.74 42.0 5.27e-01 83.8% 93.2%
3261395 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 41.0 5.32e-01 77.8% 94.8%
3570399 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 46.0 5.55e-01 85.9% 95.4%
4949848 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.74 42.0 5.35e-01 88.9% 100.0%
4321173 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.72 42.0 5.33e-01 85.9% 98.3%
3581896 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.72 43.0 5.18e-01 81.8% 90.8%
3854862 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 42.0 4.34e-01 86.9% 61.1%
4079197 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 44.0 4.79e-01 80.8% 72.9%
5022491 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.71 55.0 5.93e-01 98.0% 95.3%
3617111 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 42.0 4.41e-01 85.9% 64.4%
3937194 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.71 44.0 5.27e-01 84.8% 95.4%
3492557 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.70 48.0 4.80e-01 85.9% 69.0%
3389169 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 43.0 4.60e-01 86.9% 70.6%
4015238 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.70 53.0 4.92e-01 97.0% 63.2%
3228278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 41.0 4.95e-01 84.8% 89.2%
4461457 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 42.0 5.10e-01 80.8% 93.8%
3932681 219.1.1.25 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.69 53.0 4.87e-01 96.0% 62.3%
3391558 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 41.0 4.57e-01 90.9% 75.0%
3625817 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.68 49.0 5.36e-01 89.9% 92.5%
4261492 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.68 53.0 4.78e-01 100.0% 60.7%
3358753 4.1.1.381 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 0.67 43.0 3.59e-01 90.9% 38.2%
3451171 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 43.0 5.14e-01 84.8% 98.5%
2570822 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.67 55.0 4.79e-01 100.0% 60.0%
5069810 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.66 40.0 4.39e-01 84.8% 73.8%
3622139 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 40.0 4.24e-01 85.9% 66.7%
3328647 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.66 45.0 4.88e-01 88.9% 82.4%
3313139 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 49.0 4.03e-01 77.8% 47.4%
4078162 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 47.0 5.37e-01 88.9% 100.0%
3387378 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 49.0 5.23e-01 84.8% 90.6%
4654204 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.65 43.0 4.56e-01 84.8% 75.3%
4251101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.45e-01 93.9% 96.5%
3602123 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.65 38.0 4.19e-01 83.8% 73.1%
4009281 219.1.1.65 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.65 50.0 4.98e-01 100.0% 78.1%
5016579 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.65 38.0 4.21e-01 84.8% 73.4%
5066224 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.64 44.0 4.60e-01 97.0% 76.7%
3637664 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.64 50.0 4.69e-01 86.9% 68.3%
4317167 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.64 44.0 4.81e-01 84.8% 87.5%
3484822 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.64 44.0 4.86e-01 87.9% 88.7%
3642001 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.63 42.0 4.91e-01 76.8% 95.7%
3907190 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.63 46.0 4.72e-01 90.9% 78.9%
4281699 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 46.0 5.12e-01 86.9% 100.0%
4340758 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 43.0 4.99e-01 77.8% 100.0%
4283343 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 48.0 5.30e-01 91.9% 100.0%
3645395 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 46.0 5.09e-01 77.8% 98.8%
552 4.1.1.61 beta barrels › SH3 › SH3 › SH3 › KapB 0.61 39.0 3.82e-01 75.8% 58.7%
3220929 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 40.0 4.49e-01 84.8% 88.0%
4228570 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 47.0 5.16e-01 90.9% 100.0%
4069560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 44.0 5.01e-01 91.9% 100.0%
4073433 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 46.0 5.05e-01 91.9% 100.0%
4577518 9.1.1.3 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › His_binding 0.60 49.0 4.05e-01 89.9% 73.3%
4220126 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 45.0 4.79e-01 92.9% 91.8%
3950458 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.59 41.0 3.42e-01 73.7% 53.9%
3468015 219.1.1.25 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.58 46.0 3.91e-01 82.8% 79.4%
3266626 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.58 47.0 4.72e-01 85.9% 94.9%
3341084 219.1.1.25 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.56 43.0 4.29e-01 80.8% 100.0%
3354387 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.55 43.0 4.61e-01 81.8% 96.5%
3217772 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 41.0 4.39e-01 79.8% 90.6%
3231154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 39.0 4.30e-01 77.8% 95.0%
4318415 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 40.0 4.14e-01 80.8% 96.8%
3928711 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 42.0 4.48e-01 88.9% 100.0%
3214653 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 39.0 4.07e-01 80.8% 93.7%
1527468 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.51 45.0 4.33e-01 96.0% 84.7%
3795384 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 42.0 3.27e-01 88.9% 42.8%
3925865 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 39.0 3.76e-01 84.8% 95.8%
3576940 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 41.0 3.19e-01 88.9% 47.1%
4147056 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.50 43.0 4.32e-01 93.9% 90.0%