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S20_GE20_scaffold_13766_prodigal-single.1__X__X__00125
Bact-VirS20_GE20_scaffold_13766_prodigal-single.1__X__X__00125
Identity
- Kingdom:
- phage
Quality
74.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-91_107-117
D2
high
residues 349-516
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00912.29 best | Transgly | 149.3 | 1.10e-43 | 93.5% | 82.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2olvB02 | 1.10.3810.10 | Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like | 0.93 | 73.0 | 7.00e-01 | 85.7% | 71.6% |
| 2oqoA00 | 1.10.3810.10 | Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like | 0.91 | 76.0 | 7.41e-01 | 97.6% | 79.6% |
| 5fgzA02 | 1.10.3810.10 | Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like | 0.89 | 63.0 | 6.49e-01 | 91.1% | 74.8% |
| 3hzsA00 | 1.10.3810.10 | Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like | 0.79 | 75.0 | 6.83e-01 | 98.2% | 80.9% |
| 2kpqA01 | 6.10.250.730 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.51 | 25.0 | 3.41e-01 | 81.5% | 100.0% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4052832 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.90 | 86.0 | 7.56e-01 | 100.0% | 72.9% |
| 4319405 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.90 | 78.0 | 6.95e-01 | 100.0% | 67.1% |
| 4108282 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.89 | 86.0 | 7.52e-01 | 100.0% | 74.5% |
| 4033682 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.89 | 78.0 | 6.75e-01 | 98.8% | 63.3% |
| 4173279 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.89 | 86.0 | 7.41e-01 | 100.0% | 72.1% |
| 4107494 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.88 | 84.0 | 7.67e-01 | 100.0% | 78.6% |
| 3971996 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.87 | 84.0 | 7.52e-01 | 100.0% | 77.3% |
| 4034309 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.87 | 84.0 | 6.88e-01 | 100.0% | 65.1% |
| 149435 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.86 | 77.0 | 6.82e-01 | 100.0% | 69.1% |
| 4390460 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.86 | 77.0 | 7.06e-01 | 100.0% | 75.1% |
| 4584589 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.85 | 82.0 | 6.88e-01 | 100.0% | 68.5% |
| 4217977 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.84 | 81.0 | 6.78e-01 | 100.0% | 70.2% |
| 3588448 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.84 | 81.0 | 6.57e-01 | 100.0% | 60.0% |
| 3980915 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.84 | 81.0 | 6.92e-01 | 100.0% | 70.2% |
| 4165534 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.83 | 76.0 | 6.78e-01 | 100.0% | 70.7% |
| 3987246 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.83 | 80.0 | 6.61e-01 | 100.0% | 64.7% |
| 4660292 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.83 | 80.0 | 6.69e-01 | 100.0% | 69.1% |
| 3949767 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.83 | 80.0 | 6.56e-01 | 100.0% | 66.5% |
| 4179241 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.82 | 79.0 | 5.32e-01 | 100.0% | 31.6% |
| 4044894 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.82 | 79.0 | 6.69e-01 | 100.0% | 67.1% |
| 3839655 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.82 | 79.0 | 6.71e-01 | 100.0% | 68.4% |
| 4669149 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.81 | 78.0 | 6.93e-01 | 100.0% | 76.0% |
| 3987240 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.81 | 77.0 | 6.55e-01 | 100.0% | 67.8% |
| 3977749 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.74 | 54.0 | 5.49e-01 | 98.2% | 75.8% |
| 4433399 | 152.1.1.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 | 0.54 | 25.0 | 3.54e-01 | 81.0% | 100.0% |
D3
medium
residues 133-276
D4
medium
residues 277-348
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.66 | 35.0 | 3.81e-01 | 80.6% | 60.0% |
| 1f06A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 39.0 | 3.20e-01 | 76.4% | 93.5% |
| 4l8hB00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.54 | 36.0 | 3.08e-01 | 86.1% | 39.8% |
| 4ffeX00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.52 | 39.0 | 3.16e-01 | 83.3% | 76.0% |
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.52 | 30.0 | 2.96e-01 | 80.6% | 48.1% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.52 | 33.0 | 3.54e-01 | 91.7% | 82.5% |
| 1ex2A00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.51 | 38.0 | 2.85e-01 | 79.2% | 63.8% |
| 5egjA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 40.0 | 3.22e-01 | 91.7% | 67.1% |
| 2g16B00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 39.0 | 3.11e-01 | 86.1% | 56.4% |
| 3w5nA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 39.0 | 3.01e-01 | 84.7% | 74.3% |
| 3abiA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.50 | 36.0 | 2.83e-01 | 77.8% | 91.0% |
| 2a22B00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.50 | 31.0 | 2.28e-01 | 79.2% | 21.7% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3393619 | 284.4.1.2 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › PF28923 | 0.59 | 34.0 | 3.89e-01 | 81.9% | 80.0% |
| 3405656 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.57 | 32.0 | 2.45e-01 | 81.9% | 23.0% |
| 3711567 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.54 | 44.0 | 2.99e-01 | 95.8% | 99.4% |
| 4974398 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.53 | 39.0 | 3.40e-01 | 100.0% | 46.9% |
| 3508271 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.52 | 41.0 | 3.37e-01 | 91.7% | 58.1% |
| 3923859 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 38.0 | 3.45e-01 | 79.2% | 69.0% |
| 3170924 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.52 | 39.0 | 2.98e-01 | 84.7% | 70.3% |
| 3604221 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.51 | 44.0 | 3.57e-01 | 100.0% | 64.1% |
| 5075688 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.51 | 37.0 | 2.92e-01 | 77.8% | 37.9% |
| 3614237 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.50 | 33.0 | 2.70e-01 | 79.2% | 36.0% |