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S20_GE20_scaffold_13766_prodigal-single.1__X__X__00165
Bact-VirS20_GE20_scaffold_13766_prodigal-single.1__X__X__00165
Identity
- Kingdom:
- phage
Quality
84.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 41-146
Domain cluster:
representative
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00196.26 best | GerE | 28.3 | 1.50e-06 | 40.6% | 57.9% |
| PF04545.23 | Sigma70_r4 | 26.6 | 4.80e-06 | 37.7% | 72.0% |
| PF08281.19 | Sigma70_r4_2 | 29.7 | 5.70e-07 | 36.8% | 64.8% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5fgmA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.88 | 53.0 | 6.77e-01 | 78.3% | 100.0% |
| 2o8xA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.86 | 49.0 | 6.47e-01 | 70.8% | 100.0% |
| 4nqwA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.85 | 50.0 | 6.48e-01 | 72.6% | 98.4% |
| 1a04A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 45.0 | 5.22e-01 | 77.4% | 76.2% |
| 3hugA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 57.0 | 6.55e-01 | 88.7% | 100.0% |
| 1s7oB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 58.0 | 5.83e-01 | 89.6% | 78.1% |
| 1p4wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 43.0 | 4.76e-01 | 77.4% | 73.6% |
| 5f64A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 45.0 | 5.38e-01 | 77.4% | 90.7% |
| 6cc0A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 42.0 | 5.25e-01 | 73.6% | 92.9% |
| 5xsoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 43.0 | 5.05e-01 | 74.5% | 89.5% |
| 3onqA03 | 1.10.10.2840 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain | 0.67 | 50.0 | 4.67e-01 | 78.3% | 69.5% |
| 4gvpA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 50.0 | 3.93e-01 | 79.2% | 89.8% |
| 2gz4A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.65 | 37.0 | 3.00e-01 | 92.5% | 29.5% |
| 2mqkA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.62 | 33.0 | 3.95e-01 | 71.7% | 80.0% |
| 3d2eA06 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.59 | 33.0 | 3.29e-01 | 100.0% | 51.3% |
| 3zh9B03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.58 | 41.0 | 3.90e-01 | 97.2% | 61.9% |
| 4ybaA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 34.0 | 3.83e-01 | 82.1% | 85.7% |
| 3ecoB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 46.0 | 4.36e-01 | 97.2% | 96.1% |
| 1t02A02 | 3.90.770.10 | Alpha Beta › Alpha-Beta Complex › 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 › 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 | 0.52 | 42.0 | 3.22e-01 | 88.7% | 83.0% |
| 2vrdA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.51 | 22.0 | 2.72e-01 | 86.8% | 59.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031363 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.97 | 58.0 | 7.60e-01 | 74.5% | 100.0% |
| 1546121 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.93 | 62.0 | 7.39e-01 | 83.0% | 96.0% |
| 4034200 | 101.1.1.275 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GerE | 0.91 | 55.0 | 7.05e-01 | 76.4% | 100.0% |
| 4139052 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.91 | 55.0 | 6.54e-01 | 76.4% | 86.7% |
| 3972638 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.89 | 54.0 | 6.92e-01 | 74.5% | 100.0% |
| 4233279 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.86 | 60.0 | 4.43e-01 | 82.1% | 31.2% |
| 3288090 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.85 | 54.0 | 6.66e-01 | 79.2% | 98.6% |
| 3979166 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.83 | 47.0 | 5.81e-01 | 71.7% | 87.1% |
| 3974736 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.82 | 57.0 | 6.32e-01 | 90.6% | 89.4% |
| 3973360 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.82 | 53.0 | 6.45e-01 | 77.4% | 100.0% |
| 3968151 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.82 | 49.0 | 5.47e-01 | 77.4% | 75.3% |
| 4279016 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.81 | 57.0 | 6.52e-01 | 86.8% | 96.2% |
| 4458444 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.81 | 57.0 | 5.97e-01 | 87.7% | 80.0% |
| 3969325 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.80 | 52.0 | 6.28e-01 | 78.3% | 100.0% |
| 3971395 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.80 | 55.0 | 6.41e-01 | 82.1% | 100.0% |
| 4304581 | 101.1.1.26 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 | 0.79 | 55.0 | 5.90e-01 | 84.9% | 80.9% |
| 4937081 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 46.0 | 5.86e-01 | 75.5% | 95.4% |
| 3283074 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.77 | 49.0 | 5.51e-01 | 77.4% | 81.2% |
| 4551350 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.76 | 46.0 | 4.87e-01 | 75.5% | 67.4% |
| 3973709 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.76 | 53.0 | 5.38e-01 | 91.5% | 73.3% |
| 4214308 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.74 | 52.0 | 5.78e-01 | 87.7% | 90.6% |
| 3967757 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.73 | 45.0 | 5.37e-01 | 74.5% | 88.0% |
| 3980681 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.72 | 45.0 | 5.23e-01 | 75.5% | 83.7% |
| 3968864 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.72 | 47.0 | 5.68e-01 | 76.4% | 94.7% |
| 4560931 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 44.0 | 5.11e-01 | 75.5% | 86.7% |
| 4486954 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.72 | 47.0 | 4.98e-01 | 77.4% | 73.7% |
| 3982095 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.70 | 44.0 | 4.63e-01 | 71.7% | 68.4% |
| 3987666 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.70 | 44.0 | 4.81e-01 | 77.4% | 78.8% |
| 4470400 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 45.0 | 5.46e-01 | 74.5% | 100.0% |
| 3290021 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.69 | 46.0 | 4.64e-01 | 77.4% | 68.6% |
| 3286340 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.65 | 44.0 | 4.63e-01 | 77.4% | 78.5% |
| 5041148 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 41.0 | 4.98e-01 | 84.0% | 97.1% |
| 5007486 | 101.1.1.540 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 | 0.62 | 42.0 | 5.01e-01 | 75.5% | 100.0% |
| 5079108 | 101.1.1.60 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 | 0.58 | 41.0 | 4.32e-01 | 72.6% | 95.8% |
| 4970998 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.57 | 40.0 | 4.12e-01 | 72.6% | 85.0% |
| 4994271 | 101.1.1.60 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 | 0.57 | 40.0 | 4.03e-01 | 73.6% | 93.6% |