←Back to structures
S20_GE20_scaffold_13766_prodigal-single.1__X__X__00198
Bact-VirS20_GE20_scaffold_13766_prodigal-single.1__X__X__00198
Identity
- Kingdom:
- phage
Quality
79.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 240-346
Domain cluster:
rep: PPR_Contig_984988_prodigal-single.1__X__X__00278__D238-337
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.66 | 60.0 | 4.97e-01 | 98.1% | 96.1% |
| 2q03A00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.64 | 53.0 | 4.98e-01 | 100.0% | 73.7% |
| 6x1kA01 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.60 | 51.0 | 4.96e-01 | 90.7% | 99.1% |
| 4fqeA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.59 | 44.0 | 3.82e-01 | 93.5% | 50.0% |
| 3n91A02 | 2.40.128.420 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 49.0 | 4.57e-01 | 96.3% | 97.1% |
| 4epaA00 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.57 | 48.0 | 2.96e-01 | 90.7% | 76.4% |
| 4gf4A00 | 2.40.160.180 | Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB | 0.55 | 45.0 | 3.25e-01 | 86.9% | 89.3% |
| 3wjcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 49.0 | 4.30e-01 | 98.1% | 96.7% |
| 4e1sA00 | 2.40.160.160 | Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain | 0.54 | 47.0 | 3.62e-01 | 96.3% | 94.6% |
| 6fokB01 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.53 | 44.0 | 2.75e-01 | 90.7% | 77.1% |
| 1uynX00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.53 | 48.0 | 3.53e-01 | 100.0% | 86.4% |
| 1bh3A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.53 | 43.0 | 3.11e-01 | 86.9% | 96.5% |
| 3kvnA02 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.52 | 47.0 | 3.38e-01 | 100.0% | 86.7% |
| 3k67A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 35.0 | 3.12e-01 | 70.1% | 82.1% |
| 5tfqA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 41.0 | 3.02e-01 | 86.0% | 85.6% |
| 2j7vB01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 41.0 | 3.09e-01 | 86.9% | 84.7% |
| 6izcA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 40.0 | 3.03e-01 | 86.0% | 87.1% |
| 1r0uA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 44.0 | 3.99e-01 | 95.3% | 95.1% |
| 1nrfA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 41.0 | 3.14e-01 | 88.8% | 85.8% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3726880 | 4252.1.1.12 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 | 0.71 | 60.0 | 5.68e-01 | 89.7% | 95.2% |
| 3724576 | 4252.1.1.12 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 | 0.69 | 58.0 | 5.60e-01 | 89.7% | 96.7% |
| 4959178 | 4252.1.1.12 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 | 0.67 | 57.0 | 5.45e-01 | 89.7% | 98.3% |
| 5022112 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.67 | 58.0 | 4.72e-01 | 92.5% | 87.4% |
| 3164479 | 3523.1.1.1 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG | 0.66 | 51.0 | 5.40e-01 | 96.3% | 90.5% |
| 901 | 4252.1.1.1 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › CrtC | 0.66 | 60.0 | 4.89e-01 | 98.1% | 91.5% |
| 4944580 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.66 | 56.0 | 5.27e-01 | 89.7% | 92.8% |
| 5043414 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.66 | 56.0 | 5.16e-01 | 90.7% | 97.8% |
| 5041783 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.66 | 60.0 | 4.78e-01 | 99.1% | 94.1% |
| 3237927 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.65 | 55.0 | 4.77e-01 | 89.7% | 75.0% |
| 3414972 | 4252.1.1.15 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › PF30558 | 0.65 | 54.0 | 4.68e-01 | 89.7% | 73.6% |
| 3730429 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.62 | 52.0 | 4.86e-01 | 91.6% | 92.6% |
| 3980456 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.60 | 46.0 | 3.04e-01 | 97.2% | 19.8% |
| 4927081 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.59 | 53.0 | 4.83e-01 | 100.0% | 96.6% |
| 1163831 | 9.25.1.2 ↗ | beta barrels › Lipocalins/Streptavidin › Uncharacterized protein BACOVA_03322 C-terminal domain › Uncharacterized protein BACOVA_03322 C-terminal domain › DUF5627 | 0.57 | 49.0 | 4.44e-01 | 96.3% | 89.2% |
| 3623756 | 9.1.1.12 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd | 0.57 | 45.0 | 3.77e-01 | 99.1% | 49.2% |
| 3193339 | 9.13.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 | 0.56 | 50.0 | 4.38e-01 | 99.1% | 75.5% |
| 3926329 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.56 | 42.0 | 3.62e-01 | 99.1% | 49.2% |
| 3978611 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.55 | 45.0 | 3.31e-01 | 90.7% | 90.0% |
| 4136961 | 9.1.1.14 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS | 0.55 | 50.0 | 4.26e-01 | 100.0% | 97.7% |
| 3981844 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 40.0 | 2.68e-01 | 95.3% | 18.4% |
| 3284607 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.54 | 33.0 | 3.43e-01 | 92.5% | 64.0% |
| 4177915 | 9.1.1.14 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS | 0.54 | 49.0 | 4.20e-01 | 100.0% | 99.4% |
| 4294796 | 9.1.1.14 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS | 0.54 | 49.0 | 4.16e-01 | 99.1% | 98.8% |
| 1298172 | 5084.5.1.8 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM | 0.53 | 39.0 | 3.42e-01 | 90.7% | 49.1% |
| 4596124 | 9.1.1.14 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS | 0.53 | 48.0 | 4.12e-01 | 99.1% | 100.0% |
| 3660463 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.53 | 41.0 | 3.52e-01 | 91.6% | 51.4% |
| 4021092 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.52 | 46.0 | 3.74e-01 | 97.2% | 66.8% |
| 4929655 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.52 | 40.0 | 3.52e-01 | 96.3% | 53.3% |
| 3469478 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.52 | 41.0 | 3.20e-01 | 94.4% | 38.3% |
| 4568018 | 223.3.1.8 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 | 0.51 | 41.0 | 3.02e-01 | 86.0% | 84.6% |
| 4047703 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.51 | 46.0 | 3.99e-01 | 100.0% | 82.4% |
| 28449 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.51 | 41.0 | 2.98e-01 | 86.0% | 95.5% |
| 5038486 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.51 | 38.0 | 3.26e-01 | 84.1% | 75.5% |
| 3981236 | 5084.5.4.6 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › TraF_2 | 0.51 | 46.0 | 3.34e-01 | 100.0% | 40.7% |
| 5015520 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.50 | 44.0 | 3.56e-01 | 97.2% | 91.0% |
| 3944999 | 5084.8.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore | 0.50 | 41.0 | 2.76e-01 | 98.1% | 22.1% |
D2
medium
residues 144-234
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gd6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.63 | 35.0 | 3.00e-01 | 70.3% | 33.8% |
| 4yfbC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.60 | 35.0 | 3.78e-01 | 74.7% | 67.9% |
| 6nvxB02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.59 | 35.0 | 3.75e-01 | 74.7% | 68.8% |
| 3nqzA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 32.0 | 3.31e-01 | 80.2% | 54.8% |
| 4wksC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.58 | 34.0 | 3.69e-01 | 74.7% | 69.3% |
| 8in8C01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 36.0 | 2.60e-01 | 89.0% | 21.8% |
| 1fm2B03 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.56 | 32.0 | 3.70e-01 | 74.7% | 77.3% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.55 | 34.0 | 3.46e-01 | 78.0% | 61.3% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.54 | 42.0 | 3.38e-01 | 86.8% | 67.4% |
| 7xoiD01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 29.0 | 2.79e-01 | 85.7% | 43.0% |
| 2q2bA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 40.0 | 3.49e-01 | 84.6% | 70.9% |
| 1uzxA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.51 | 29.0 | 2.57e-01 | 80.2% | 35.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 133867 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.63 | 35.0 | 3.17e-01 | 70.3% | 39.3% |
| 3958888 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 37.0 | 3.10e-01 | 78.0% | 34.8% |
| 3368394 | 4325.1.1.11 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF27041 | 0.58 | 35.0 | 3.48e-01 | 80.2% | 56.8% |
| 4105352 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.58 | 35.0 | 2.52e-01 | 78.0% | 19.7% |
| 339577 | 10.6.1.1 ↗ | beta sandwiches › jelly-roll › Calcium-mediated lectin › Calcium-mediated lectin › PA-IIL | 0.57 | 44.0 | 3.93e-01 | 82.4% | 75.8% |
| 3596066 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 38.0 | 3.42e-01 | 83.5% | 52.8% |
| None | — | 0.53 | 37.0 | 3.20e-01 | 81.3% | 46.4% | |
| 3661619 | 192.18.1.0 ↗ | alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like | 0.53 | 34.0 | 2.55e-01 | 80.2% | 26.2% |
| 3260517 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 31.0 | 2.87e-01 | 78.0% | 43.3% |
| 3272662 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.52 | 39.0 | 2.73e-01 | 80.2% | 36.7% |
| 3276558 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.52 | 38.0 | 2.68e-01 | 79.1% | 33.2% |
| 3993254 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 38.0 | 4.01e-01 | 84.6% | 91.3% |
| 5077400 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.50 | 34.0 | 3.34e-01 | 94.5% | 62.5% |