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S20_GE20_scaffold_13766_prodigal-single.1__X__X__00249

Bact-Vir

S20_GE20_scaffold_13766_prodigal-single.1__X__X__00249

Identity

Kingdom:
phage

Quality

76.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-99
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5bviA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.75 66.0 5.10e-01 98.8% 94.0%
4r9pA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.74 64.0 4.77e-01 97.5% 85.2%
2lc1A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.74 62.0 5.84e-01 93.8% 98.0%
5fmvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 41.0 4.10e-01 96.3% 57.1%
3ld7A00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.64 53.0 5.25e-01 92.6% 100.0%
1w15A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.59 41.0 3.46e-01 95.1% 43.9%
1z0sA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.59 44.0 3.81e-01 79.0% 79.2%
7alkA01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 49.0 3.93e-01 91.4% 98.1%
1jz7A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.56e-01 95.1% 53.8%
3shsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 32.0 3.11e-01 96.3% 45.7%
1d5rA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 38.0 3.26e-01 95.1% 42.1%
5f7uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.39e-01 96.3% 51.4%
1x19A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 35.0 2.72e-01 96.3% 32.5%
1ks6A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.54 47.0 4.30e-01 96.3% 89.7%
1yq2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.46e-01 95.1% 53.0%
2xomA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 34.0 2.83e-01 93.8% 36.6%
7altB01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.51e-01 93.8% 98.1%
5mw5A01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.56e-01 93.8% 97.4%
4xl1E01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.50e-01 92.6% 94.8%
1kshB00 2.70.50.40 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit 0.51 38.0 3.23e-01 80.2% 68.3%
2eefA01 2.60.40.2440 Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain 0.51 41.0 3.62e-01 92.6% 100.0%
3douA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 31.0 2.46e-01 98.8% 29.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3899206 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.76 65.0 4.84e-01 93.8% 82.0%
145200 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.74 62.0 5.84e-01 93.8% 98.0%
5021703 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 38.0 3.63e-01 91.4% 49.5%
4432927 4004.1.1.3 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.66 56.0 4.52e-01 96.3% 88.7%
3765343 3369.1.1.0 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 0.59 48.0 3.82e-01 88.9% 79.3%
3218675 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 52.0 4.95e-01 97.5% 87.4%
4881886 382.1.1.4 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › ecTbetaR2 0.56 49.0 4.40e-01 95.1% 88.2%
3218674 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 49.0 4.79e-01 97.5% 91.1%
3393270 382.1.1.6 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR 0.56 45.0 4.24e-01 100.0% 71.0%
5027316 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 35.0 2.85e-01 95.1% 33.5%
3934531 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.55 48.0 4.67e-01 97.5% 92.2%
3218676 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.55 47.0 4.37e-01 96.3% 81.0%
3621016 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 43.0 4.40e-01 97.5% 87.5%
90328 382.1.1.4 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › ecTbetaR2 0.54 47.0 4.33e-01 97.5% 93.3%
3847158 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 42.0 3.44e-01 97.5% 47.6%
3415021 11.1.1.108 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.52 36.0 3.38e-01 98.8% 60.0%
D2 high residues 345-439
PDB
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u07B00 3.30.2420.10 Alpha Beta › 2-Layer Sandwich › TolA/TonB C-terminal domain › TonB 0.82 64.0 6.69e-01 96.8% 89.8%
1lr0A00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.74 66.0 6.00e-01 96.8% 76.2%
2k9kA00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.73 61.0 5.89e-01 93.7% 81.1%
1s62A00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.68 56.0 5.53e-01 95.8% 84.3%
4g7xB00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.68 58.0 5.72e-01 96.8% 94.1%
2m2kA00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.67 59.0 5.36e-01 100.0% 75.6%
4hesA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.64 47.0 3.39e-01 77.9% 100.0%
4bkwA03 3.30.500.40 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.63 49.0 4.53e-01 100.0% 64.3%
3vskA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.61 45.0 3.08e-01 78.9% 99.7%
3udfA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.61 46.0 3.09e-01 81.1% 96.0%
2a2lC00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.58 44.0 3.91e-01 82.1% 96.5%
4clcA00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.58 41.0 3.43e-01 73.7% 80.5%
3fwlA02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 44.0 2.99e-01 85.3% 84.8%
2nykA01 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.57 47.0 4.08e-01 91.6% 75.0%
4le5A02 3.30.300.10 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.56 47.0 4.20e-01 92.6% 97.8%
1dgjA07 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.56 47.0 3.83e-01 96.8% 87.9%
2i87B02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 49.0 4.19e-01 98.9% 59.7%
1tf1B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 43.0 3.55e-01 83.2% 99.4%
1e4eB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 49.0 4.16e-01 97.9% 70.5%
6rk7B02 3.30.300.10 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.55 46.0 4.23e-01 92.6% 97.7%
1ex0A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 32.0 3.05e-01 100.0% 47.4%
4nkpA01 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.52 39.0 3.57e-01 81.1% 100.0%
1vl4A01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.52 40.0 3.17e-01 84.2% 73.7%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 38.0 3.46e-01 96.8% 58.7%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.51 36.0 2.92e-01 75.8% 93.3%
2w3sB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.51 42.0 3.41e-01 96.8% 85.5%
4ypjA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.61e-01 82.1% 80.7%
3payC01 2.60.40.2100 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.05e-01 76.8% 73.6%
4iihB04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 32.0 3.13e-01 98.9% 57.0%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.50 37.0 3.14e-01 80.0% 99.4%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4636115 272.1.1.0 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain 0.88 75.0 7.94e-01 91.6% 100.0%
4338610 272.1.1.0 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain 0.85 66.0 7.19e-01 95.8% 97.5%
3964903 272.1.1.1 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.85 64.0 7.11e-01 100.0% 100.0%
2899924 272.1.1.1 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.82 63.0 6.56e-01 91.6% 87.4%
3970711 272.1.1.0 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain 0.81 68.0 7.06e-01 94.7% 95.5%
2599555 272.1.1.1 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.80 71.0 6.86e-01 100.0% 85.0%
4324302 272.1.1.1 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.80 61.0 6.60e-01 78.9% 94.9%
4628638 272.1.1.1 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.80 70.0 7.20e-01 100.0% 98.9%
3972969 272.1.1.0 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain 0.80 73.0 7.30e-01 97.9% 100.0%
4549660 272.1.1.1 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.80 64.0 6.92e-01 86.3% 100.0%
4289847 272.1.1.1 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.79 71.0 7.12e-01 95.8% 97.9%
3839673 272.1.1.1 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.79 73.0 6.94e-01 100.0% 89.1%
3385499 272.1.1.1 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.79 70.0 7.06e-01 95.8% 98.9%
4096220 272.1.1.1 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.79 70.0 7.05e-01 97.9% 95.8%
3968588 272.1.1.3 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 0.78 66.0 6.93e-01 96.8% 100.0%
3967921 272.1.1.3 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 0.77 61.0 6.63e-01 91.6% 100.0%
3840130 272.1.1.3 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 0.76 63.0 6.61e-01 96.8% 98.8%
3974767 272.1.1.0 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain 0.76 66.0 6.68e-01 94.7% 96.8%
3166161 272.1.1.2 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA 0.74 62.0 6.51e-01 93.7% 100.0%
2391752 272.1.1.1 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.72 65.0 6.46e-01 100.0% 93.9%
3386099 272.1.1.3 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 0.72 60.0 6.30e-01 97.9% 100.0%
3970590 272.1.1.0 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain 0.70 61.0 5.86e-01 96.8% 91.8%
3942685 272.1.1.2 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA 0.70 59.0 5.70e-01 94.7% 81.9%
152223 272.1.1.2 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA 0.68 58.0 5.72e-01 96.8% 94.1%
1161117 272.1.1.2 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA 0.67 57.0 5.84e-01 96.8% 95.7%
1393818 272.1.1.1 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.65 58.0 5.71e-01 100.0% 94.1%
5050348 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.58 40.0 3.59e-01 70.5% 100.0%
3648905 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 47.0 4.27e-01 93.7% 81.5%
3316554 206.1.3.14 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP 0.55 47.0 3.27e-01 100.0% 72.8%
4998374 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 38.0 3.48e-01 84.2% 57.6%
3969073 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.53 41.0 3.36e-01 86.3% 78.4%
3743609 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.52 39.0 3.21e-01 81.1% 75.4%
1549432 11.1.1.14 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.51 39.0 3.63e-01 82.1% 82.1%
3481766 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 38.0 3.63e-01 81.1% 81.8%
3245889 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 38.0 3.43e-01 83.2% 90.7%
D3 medium residues 183-228_245-317
PDB
Domain cluster: representative