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S27_BME27_1069154_prodigal-single.1__X__X__00047

Bact-Vir

S27_BME27_1069154_prodigal-single.1__X__X__00047

Identity

Kingdom:
phage

Quality

83.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-49_73-117
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10021.16 best PARG_cat_microb 58.9 1.10e-15 54.4% 32.2%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3sigA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.85 71.0 4.97e-01 88.0% 39.6%
2jiiA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 45.0 3.59e-01 88.0% 88.0%
4dsfA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.53 33.0 3.15e-01 77.2% 51.8%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.51 32.0 2.75e-01 79.3% 38.9%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2601919 7529.1.1.5 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_microb 0.85 71.0 4.97e-01 88.0% 39.6%
3277186 4964.1.1.1 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.52 35.0 3.18e-01 100.0% 52.0%