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S27_BME27_1069154_prodigal-single.1__X__X__00082

Bact-Vir

S27_BME27_1069154_prodigal-single.1__X__X__00082

Identity

Kingdom:
phage

Quality

91.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-130
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14528.12 best LAGLIDADG_3 21.8 2.40e-04 80.4% 81.7%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.86 65.0 6.48e-01 100.0% 76.3%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.79 54.0 6.08e-01 92.9% 90.8%
1dfaA03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.77 61.0 6.55e-01 100.0% 96.8%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.76 58.0 5.84e-01 100.0% 79.3%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.73 57.0 4.99e-01 96.4% 56.5%
4efjA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.72 52.0 4.81e-01 98.2% 59.3%
3e54A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.71 54.0 4.75e-01 96.4% 55.3%
4lq0A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.68 53.0 4.78e-01 100.0% 61.2%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 30.0 2.95e-01 81.2% 38.4%
7by6B04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.60 51.0 4.04e-01 92.0% 96.5%
2mdaA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 41.0 4.41e-01 87.5% 82.1%
6gdxA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 39.0 4.00e-01 75.0% 67.3%
2rhqB05 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.60 50.0 4.11e-01 90.2% 94.1%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 38.0 4.01e-01 75.0% 71.7%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 42.0 4.56e-01 83.9% 85.4%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 38.0 3.94e-01 76.8% 67.0%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.59 48.0 4.50e-01 87.5% 86.0%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 50.0 3.72e-01 92.9% 83.7%
1atiB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 48.0 3.54e-01 89.3% 82.3%
2clqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 35.0 3.95e-01 86.6% 78.8%
2zomA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 37.0 3.81e-01 71.4% 68.2%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 37.0 4.14e-01 83.9% 85.1%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 42.0 3.53e-01 77.7% 80.5%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.56 45.0 3.26e-01 85.7% 46.8%
3e05B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 42.0 3.49e-01 79.5% 78.6%
3od1A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 45.0 3.30e-01 89.3% 91.6%
4iyqA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 37.0 3.87e-01 76.8% 72.9%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 41.0 3.46e-01 78.6% 79.9%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.54 44.0 4.26e-01 90.2% 88.5%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.53 48.0 3.94e-01 100.0% 87.1%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 3.93e-01 76.8% 79.2%
6qdwt00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 40.0 4.33e-01 100.0% 98.9%
5v7qT00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 40.0 4.21e-01 99.1% 93.9%
1g84A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 4.29e-01 86.6% 92.4%
2vfrA04 3.30.70.2520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 32.0 3.50e-01 82.1% 76.6%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 38.0 3.29e-01 78.6% 85.4%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979626 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.82 68.0 6.45e-01 100.0% 74.6%
3603293 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.81 67.0 6.69e-01 100.0% 85.2%
5066391 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.80 70.0 6.46e-01 99.1% 75.0%
5027492 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.80 67.0 6.19e-01 99.1% 70.7%
4950411 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.80 63.0 6.70e-01 95.5% 93.0%
4994374 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.79 67.0 6.58e-01 100.0% 83.3%
3174942 242.1.1.3 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › Hom_end 0.78 67.0 6.61e-01 100.0% 85.0%
3952678 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.78 60.0 6.68e-01 94.6% 100.0%
4999899 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.78 68.0 6.52e-01 100.0% 82.4%
3603119 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.78 65.0 6.40e-01 100.0% 82.5%
3955114 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.77 70.0 6.51e-01 100.0% 79.3%
2780879 1172.1.1.1 beta barrels › UL131A-like › UL130 C-terminal domain › UL130 C-terminal domain › Gp_UL130 0.76 33.0 3.32e-01 76.8% 41.4%
4993382 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.76 61.0 6.55e-01 95.5% 98.9%
5035479 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.76 58.0 6.41e-01 95.5% 98.9%
5013813 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.76 68.0 6.06e-01 100.0% 70.7%
4997602 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.76 61.0 6.29e-01 95.5% 90.5%
4972140 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.75 62.0 5.55e-01 96.4% 64.7%
4933369 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.75 66.0 6.32e-01 100.0% 81.5%
3949585 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.75 59.0 5.89e-01 100.0% 80.9%
135378 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.74 58.0 4.92e-01 96.4% 52.3%
3603683 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.74 59.0 5.42e-01 96.4% 65.5%
4975579 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.74 55.0 4.94e-01 95.5% 56.8%
4945568 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.73 59.0 5.42e-01 96.4% 66.9%
5031916 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.72 62.0 6.02e-01 100.0% 83.2%
5030848 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.72 59.0 5.38e-01 96.4% 67.6%
3971017 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.62 42.0 4.23e-01 75.9% 69.1%
149356 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.62 41.0 4.15e-01 74.1% 67.3%
402134 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.61 43.0 4.24e-01 72.3% 71.2%
3179709 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.61 51.0 3.59e-01 92.9% 89.9%
4937467 314.1.1.11 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.60 49.0 4.14e-01 88.4% 95.3%
3583468 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.60 40.0 4.05e-01 76.8% 68.2%
3898132 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.59 42.0 3.96e-01 75.0% 59.3%
3201142 223.2.1.25 a+b three layers › Profilin-like › profilin-like › profilin-like › Avl9 0.59 38.0 3.80e-01 84.8% 62.6%
4515208 304.24.1.7 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › V_ATPase_I 0.59 40.0 3.98e-01 71.4% 67.0%
4015616 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.59 48.0 3.36e-01 88.4% 84.1%
4945294 314.1.1.11 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.58 49.0 4.11e-01 92.0% 93.3%
4451470 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.58 41.0 3.95e-01 73.2% 63.8%
3689675 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.58 29.0 3.24e-01 90.2% 57.6%
3589403 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.58 47.0 4.65e-01 87.5% 86.7%
5060406 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.58 39.0 3.99e-01 70.5% 70.0%
3569962 4323.1.1.1 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.58 39.0 4.23e-01 71.4% 82.1%
4986411 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.57 43.0 3.49e-01 77.7% 74.2%
3509491 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.57 38.0 3.86e-01 70.5% 68.2%
3742193 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.57 46.0 3.32e-01 89.3% 86.0%
3733861 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.57 46.0 2.87e-01 88.4% 45.3%
3459357 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.56 37.0 3.71e-01 70.5% 65.2%
3802659 304.8.1.66 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 0.56 43.0 4.46e-01 86.6% 86.7%
4415830 314.1.1.11 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.55 47.0 3.90e-01 92.9% 90.0%
3786767 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.55 41.0 4.28e-01 88.4% 85.7%
3839422 304.109.1.1 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.54 41.0 4.38e-01 100.0% 96.8%
1903993 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.54 41.0 3.46e-01 78.6% 79.4%
5078601 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.54 37.0 3.75e-01 75.9% 70.4%
4057993 304.109.1.1 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.54 40.0 4.25e-01 98.2% 90.0%
4675688 304.109.1.1 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.54 41.0 4.38e-01 100.0% 96.8%
3869669 223.1.1.98 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 0.54 24.0 2.58e-01 83.0% 47.0%
3244973 11.1.1.673 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_N 0.53 43.0 4.11e-01 86.6% 86.2%
409322 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.53 36.0 3.69e-01 75.9% 71.0%
3589225 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.53 43.0 4.08e-01 90.2% 85.9%
3457894 304.109.1.1 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.53 38.0 3.77e-01 95.5% 70.8%
3835251 304.109.1.1 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.52 37.0 3.92e-01 98.2% 87.4%
3656588 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.51 41.0 3.31e-01 85.7% 67.1%
4599317 304.109.1.1 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.51 37.0 4.02e-01 100.0% 94.6%