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S27_BME27_1069154_prodigal-single.1__X__X__00130

Bact-Vir

S27_BME27_1069154_prodigal-single.1__X__X__00130

Identity

Kingdom:
phage

Quality

95.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-60
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 45.0 3.98e-01 75.9% 72.1%
5dx9A01 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.63 51.0 4.87e-01 98.3% 94.4%
2rsxA00 3.10.450.420 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 51.0 3.82e-01 94.8% 47.2%
2cpxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 49.0 4.49e-01 91.4% 89.9%
3wpwA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.61 49.0 3.86e-01 100.0% 95.3%
3e0rB01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 40.0 3.20e-01 100.0% 33.6%
5b7gA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.60 40.0 2.67e-01 100.0% 16.5%
1u02A02 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.59 47.0 4.50e-01 100.0% 85.5%
4qjvA03 3.30.70.3110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 45.0 4.48e-01 91.4% 80.6%
2zfzD00 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.58 47.0 4.36e-01 94.8% 74.7%
2cpdA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 45.0 4.26e-01 91.4% 77.3%
3oulA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 46.0 3.14e-01 91.4% 32.4%
2cpjA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 44.0 3.86e-01 91.4% 66.7%
6swc801 3.30.30.170 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.57 41.0 3.39e-01 79.3% 50.9%
1ibaA00 3.30.1360.60 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB 0.57 47.0 4.42e-01 100.0% 74.4%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.57 38.0 3.27e-01 72.4% 88.6%
2chcC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.18e-01 84.5% 69.2%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.56 42.0 3.62e-01 82.8% 58.3%
2g4bA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 44.0 3.88e-01 91.4% 82.8%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.55 40.0 3.30e-01 81.0% 84.0%
2k5tA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 44.0 3.44e-01 89.7% 59.4%
5i92F01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 46.0 3.40e-01 100.0% 58.0%
3smzA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 42.0 3.59e-01 93.1% 64.3%
2cpyA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 42.0 3.87e-01 91.4% 82.9%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.54 38.0 3.21e-01 77.6% 85.3%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 40.0 3.15e-01 82.8% 87.2%
6k8hA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 46.0 3.34e-01 100.0% 53.9%
4zm3B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 44.0 3.48e-01 100.0% 70.4%
4oxiA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.53 40.0 2.52e-01 89.7% 21.3%
5pabH01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 43.0 3.47e-01 96.6% 86.6%
2cpeA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 40.0 3.70e-01 91.4% 90.6%
2vijA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.53 40.0 3.26e-01 91.4% 88.7%
3l44A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 45.0 3.28e-01 100.0% 54.6%
2ykyB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 39.0 2.75e-01 79.3% 87.3%
2zc0A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 44.0 3.24e-01 100.0% 66.5%
1rwhA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 43.0 2.89e-01 100.0% 76.4%
5w0hA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 40.0 3.75e-01 93.1% 86.3%
3e7wA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 38.0 2.32e-01 79.3% 18.9%
3ce7A00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.52 42.0 3.81e-01 100.0% 80.0%
2cy8A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 44.0 3.13e-01 100.0% 54.5%
2dgwA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 41.0 3.74e-01 91.4% 76.2%
5eh1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.21e-01 79.3% 60.0%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 39.0 3.27e-01 82.8% 63.6%
5tw4A02 2.30.140.20 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain 0.51 34.0 3.30e-01 100.0% 60.9%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4958446 241.9.1.0 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like 0.71 47.0 3.66e-01 100.0% 33.3%
3173084 331.1.1.13 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C 0.67 48.0 4.29e-01 77.6% 80.0%
5030621 241.9.1.2 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 0.66 42.0 3.46e-01 100.0% 33.6%
1841041 3853.1.1.1 a+b two layers › Oxalate Biosynthetic Component A (ObcA) insertion domains › Oxalate Biosynthetic Component A (ObcA) insertion domains › Oxalate Biosynthetic Component A (ObcA) insertion domains › ObcA_N 0.65 39.0 4.52e-01 98.3% 85.0%
4149108 206.1.1.27 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › YukC 0.64 50.0 3.44e-01 84.5% 25.0%
4185571 306.1.1.0 a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB 0.64 53.0 5.06e-01 96.6% 81.4%
3216246 2004.1.1.230 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tsr1_G-like 0.64 41.0 2.99e-01 100.0% 21.7%
3249558 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.64 54.0 4.94e-01 100.0% 91.3%
3788605 2006.1.1.27 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › ISN1 0.64 53.0 4.49e-01 100.0% 85.7%
3741533 181.1.1.14 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › ISN1 0.63 53.0 4.72e-01 100.0% 81.1%
4263802 2006.1.1.27 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › ISN1 0.63 53.0 3.24e-01 100.0% 18.8%
4100251 306.1.1.1 a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB › PTS_EIIB 0.62 52.0 4.64e-01 100.0% 71.1%
4375524 2006.1.1.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP 0.62 50.0 3.47e-01 100.0% 25.7%
4324737 306.1.1.0 a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB 0.62 52.0 4.87e-01 100.0% 78.7%
3973095 306.1.1.0 a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB 0.61 50.0 4.69e-01 96.6% 81.3%
3541211 269.1.1.3 a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › COLFI 0.61 50.0 3.54e-01 94.8% 84.0%
4647064 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.61 39.0 3.89e-01 100.0% 63.3%
3503286 306.1.1.1 a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB › PTS_EIIB 0.60 50.0 4.70e-01 100.0% 78.7%
3946500 306.1.1.1 a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB › PTS_EIIB 0.60 50.0 4.65e-01 100.0% 75.0%
4031368 3264.1.1.0 0.60 39.0 2.90e-01 100.0% 26.2%
5017022 331.1.1.27 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CBS 0.59 47.0 3.06e-01 91.4% 27.0%
5083199 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.58 48.0 3.84e-01 96.6% 97.7%
4660203 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.58 40.0 3.15e-01 100.0% 33.6%
3947754 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.58 48.0 4.53e-01 100.0% 92.0%
3598188 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 44.0 3.77e-01 91.4% 60.0%
4336238 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.57 37.0 3.20e-01 100.0% 40.0%
4047958 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.56 46.0 3.99e-01 98.3% 69.9%
4931934 241.9.1.0 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like 0.56 38.0 3.27e-01 100.0% 41.0%
4031647 306.2.1.1 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C 0.55 46.0 4.02e-01 96.6% 70.2%
4110222 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 44.0 3.78e-01 98.3% 65.5%
4959522 241.9.1.1 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.55 42.0 3.34e-01 91.4% 40.8%
4187835 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 45.0 3.78e-01 98.3% 65.5%
4254829 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 44.0 3.82e-01 98.3% 69.2%
4294741 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 45.0 3.85e-01 100.0% 70.5%
4220704 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 44.0 3.68e-01 98.3% 63.5%
4979253 241.9.1.1 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.53 45.0 3.72e-01 98.3% 66.4%
3585441 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.53 41.0 3.40e-01 91.4% 57.5%
4928672 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.53 44.0 3.71e-01 98.3% 66.4%
3797588 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 41.0 3.81e-01 91.4% 86.3%
4996318 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.53 44.0 3.67e-01 98.3% 63.6%
5041788 3715.1.1.0 a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e 0.52 42.0 3.80e-01 98.3% 78.9%
4365324 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 44.0 3.67e-01 98.3% 65.5%
4408661 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 42.0 3.49e-01 98.3% 60.0%
4983921 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 44.0 3.64e-01 98.3% 65.5%
3839444 241.9.1.2 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 0.52 44.0 3.54e-01 98.3% 70.0%
4061614 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 43.0 3.63e-01 98.3% 68.6%
3671527 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 43.0 2.93e-01 96.6% 60.9%
4588019 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 42.0 3.54e-01 98.3% 65.5%
3330042 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.86e-01 93.1% 89.2%
3847559 389.1.1.1 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.51 29.0 3.35e-01 94.8% 91.4%
None 0.50 41.0 2.92e-01 96.6% 82.5%
3786621 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.50 38.0 3.50e-01 93.1% 86.7%
4997960 242.4.1.0 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain 0.50 37.0 3.22e-01 81.0% 51.6%
3784383 304.48.1.3 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.50 39.0 2.49e-01 93.1% 18.4%