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S27_BME27_1069154_prodigal-single.1__X__X__00200

Bact-Vir

S27_BME27_1069154_prodigal-single.1__X__X__00200

Identity

Kingdom:
phage

Quality

68.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-71
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nkbB02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.67 46.0 4.12e-01 73.0% 80.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 45.0 3.64e-01 73.0% 72.6%
1rwiA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.65 55.0 3.66e-01 95.2% 41.0%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.65 47.0 3.22e-01 79.4% 95.4%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 44.0 3.59e-01 73.0% 79.8%
3nm6B00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.62 47.0 3.32e-01 85.7% 27.9%
3s8zA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 50.0 3.24e-01 90.5% 30.7%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 50.0 3.92e-01 92.1% 48.6%
4cciA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 43.0 2.87e-01 73.0% 76.9%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.61 54.0 4.33e-01 100.0% 72.2%
1fwxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 52.0 3.09e-01 95.2% 36.4%
3fvzA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 50.0 3.21e-01 93.7% 44.4%
2b5uA03 3.10.380.10 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Colicin E3-like ribonuclease domain 0.61 44.0 3.89e-01 79.4% 51.0%
4m00A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 42.0 2.86e-01 73.0% 78.6%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.60 46.0 4.18e-01 85.7% 78.7%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.60 44.0 4.30e-01 87.3% 72.2%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 42.0 3.88e-01 76.2% 93.0%
3i7dA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 44.0 3.32e-01 79.4% 87.3%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.59 44.0 3.74e-01 82.5% 56.0%
1r75A00 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 50.0 4.14e-01 93.7% 80.9%
1lbvA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.59 44.0 3.53e-01 84.1% 89.1%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 49.0 3.23e-01 98.4% 92.3%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 43.0 3.86e-01 81.0% 90.2%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.58 45.0 3.67e-01 90.5% 46.7%
5c68A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 47.0 4.00e-01 93.7% 92.7%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.57 41.0 3.32e-01 81.0% 71.4%
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.55 43.0 3.84e-01 90.5% 94.9%
3sb1A01 3.30.1370.140 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › HupH hydrogenase expression protein, C-terminal domain 0.55 43.0 3.89e-01 95.2% 70.7%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.55 41.0 2.57e-01 82.5% 49.8%
4ae8D00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 45.0 3.41e-01 92.1% 55.8%
2r2zA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 40.0 3.73e-01 81.0% 85.7%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 44.0 3.89e-01 92.1% 59.6%
2czrA01 3.40.1350.70 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain 0.54 43.0 3.64e-01 85.7% 52.8%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.54 40.0 3.49e-01 82.5% 51.4%
1n7oA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.54 37.0 3.42e-01 71.4% 98.8%
1ijqA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 44.0 3.00e-01 93.7% 27.6%
4ozuA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.83e-01 96.8% 34.3%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 43.0 2.84e-01 93.7% 93.4%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.52 39.0 3.31e-01 84.1% 53.8%
1sr4A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 39.0 3.04e-01 87.3% 68.3%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.52 42.0 3.15e-01 92.1% 73.9%
1qnaA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 38.0 3.46e-01 82.5% 58.1%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 41.0 2.78e-01 93.7% 25.5%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3222419 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.70 51.0 4.90e-01 79.4% 69.3%
3622446 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.69 42.0 4.11e-01 74.6% 54.3%
3963560 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.69 50.0 5.09e-01 81.0% 81.7%
3409029 331.23.1.2 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › IntS9_C 0.68 51.0 4.91e-01 81.0% 73.0%
3997263 6043.1.1.4 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.68 54.0 5.00e-01 87.3% 72.5%
3808306 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.68 57.0 3.65e-01 95.2% 22.0%
4954562 10.29.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in distal tail protein (Dit)-like proteins › Jelly-roll domain in distal tail protein (Dit)-like proteins 0.68 52.0 4.13e-01 81.0% 86.7%
4065996 3894.1.1.2 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfA_EBD 0.68 52.0 4.09e-01 82.5% 47.7%
3645247 4357.1.1.6 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.68 42.0 3.79e-01 74.6% 44.7%
3210220 4205.1.1.0 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like 0.67 49.0 3.71e-01 85.7% 32.3%
5004274 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.66 48.0 4.60e-01 77.8% 68.0%
3550365 331.23.1.2 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › IntS9_C 0.66 48.0 4.53e-01 77.8% 66.7%
3824503 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.66 57.0 3.70e-01 96.8% 23.6%
3925881 5.1.4.407 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, Alsin_RLD 0.66 57.0 3.47e-01 95.2% 32.6%
3272453 6.1.1.7 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › CDtoxinA 0.66 54.0 4.31e-01 93.7% 63.7%
3627280 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.66 50.0 4.73e-01 82.5% 73.3%
3267146 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 54.0 3.35e-01 95.2% 26.5%
5003963 5.1.11.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.63 53.0 3.22e-01 95.2% 25.5%
4115428 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.62 48.0 3.49e-01 84.1% 68.3%
3233815 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 42.0 2.84e-01 71.4% 29.1%
4930465 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.62 48.0 4.94e-01 87.3% 100.0%
4028777 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.61 53.0 3.05e-01 96.8% 16.6%
5078978 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.61 52.0 3.43e-01 95.2% 35.8%
3934831 5.1.2.9 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Apyrase 0.61 51.0 3.28e-01 95.2% 40.9%
3927192 3523.1.1.0 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.61 44.0 3.47e-01 77.8% 76.4%
3474880 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.61 43.0 3.89e-01 76.2% 80.0%
3641403 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.61 50.0 3.39e-01 95.2% 28.1%
4241220 5.1.3.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 0.60 51.0 3.37e-01 95.2% 28.1%
4958164 298.1.1.42 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA 0.60 44.0 2.80e-01 77.8% 20.3%
4030034 109.4.1.1140 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_PEP5_VPS11 0.59 50.0 2.98e-01 93.7% 13.1%
4589583 2008.1.1.191 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HpaII 0.59 41.0 3.01e-01 73.0% 74.0%
3227356 633.23.1.4 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.59 43.0 3.00e-01 79.4% 63.3%
4977715 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 42.0 3.51e-01 77.8% 85.2%
4468976 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.58 46.0 3.06e-01 90.5% 35.9%
3933565 5.1.4.229 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.58 49.0 3.04e-01 95.2% 23.2%
3605602 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 48.0 3.04e-01 95.2% 20.3%
7054 881.2.1.1 ↗ a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like › DUF3242 0.58 45.0 3.74e-01 90.5% 49.6%
4029119 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 48.0 3.05e-01 95.2% 38.0%
2462240 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.57 46.0 3.07e-01 90.5% 68.5%
4958290 2003.1.1.22 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.57 40.0 2.68e-01 77.8% 39.7%
4029614 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 47.0 2.88e-01 96.8% 21.2%
1320692 331.21.1.1 ↗ a+b two layers › TBP-like › Sporulation inhibitor of replication protein SirA › Sporulation inhibitor of replication protein SirA › SirA 0.57 41.0 3.32e-01 81.0% 71.4%
3938729 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 46.0 3.05e-01 93.7% 22.1%
4990232 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.56 46.0 3.28e-01 90.5% 79.5%
3214587 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.56 39.0 3.62e-01 73.0% 62.5%
3386489 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.56 47.0 3.56e-01 100.0% 85.9%
2410435 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 47.0 2.98e-01 100.0% 85.1%
3586488 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 45.0 2.92e-01 98.4% 95.8%
3907821 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.55 38.0 3.53e-01 76.2% 68.9%
3809821 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 44.0 2.88e-01 98.4% 95.3%
3581513 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.53 37.0 3.51e-01 74.6% 67.5%
3992641 331.4.1.9 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.53 37.0 3.62e-01 77.8% 67.1%
3229102 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.53 39.0 2.70e-01 81.0% 33.6%
3832604 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 45.0 2.61e-01 98.4% 52.4%
3166921 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 43.0 2.81e-01 95.2% 93.3%
3377025 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 44.0 2.84e-01 98.4% 97.6%
3877833 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.52 36.0 3.46e-01 76.2% 75.0%
4023904 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 42.0 2.62e-01 95.2% 92.2%
3515019 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 42.0 2.82e-01 98.4% 86.7%
3988707 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 35.0 3.64e-01 76.2% 90.9%
4815507 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.50 35.0 3.31e-01 77.8% 69.8%