Back to structures

S27_BME27_1069154_prodigal-single.1__X__X__00502

Bact-Vir

S27_BME27_1069154_prodigal-single.1__X__X__00502

Identity

Kingdom:
phage

Quality

96.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-92
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o55A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.76 70.0 5.03e-01 100.0% 65.4%
2lleA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.67 58.0 4.34e-01 96.7% 62.8%
1vh7A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.67 59.0 4.34e-01 100.0% 60.0%
4j9jA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 58.0 4.38e-01 98.9% 54.2%
1e0tA01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.66 45.0 4.10e-01 79.3% 52.8%
7oo1A02 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.64 43.0 4.01e-01 79.3% 54.2%
2egzC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 58.0 4.36e-01 100.0% 66.1%
3eoeD01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.63 46.0 4.07e-01 83.7% 51.8%
1a49A01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.62 44.0 3.59e-01 82.6% 38.6%
1gt9100 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.62 55.0 3.69e-01 100.0% 70.9%
4qhrA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.61 53.0 4.14e-01 97.8% 58.2%
3e0vB01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.61 45.0 3.78e-01 83.7% 44.7%
1ytlA00 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.61 45.0 3.86e-01 87.0% 46.8%
2x5fA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.60 53.0 3.68e-01 100.0% 80.2%
2yzsA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.60 38.0 4.08e-01 92.4% 73.8%
3qtgA03 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.59 44.0 4.14e-01 79.3% 63.5%
4h17A00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.59 52.0 4.10e-01 100.0% 88.8%
3ibsA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.58 51.0 4.00e-01 100.0% 91.3%
2qv0A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 51.0 4.69e-01 98.9% 85.2%
3tdnA00 3.40.50.12600 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 52.0 4.77e-01 100.0% 85.1%
3gl9A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 51.0 4.75e-01 100.0% 89.2%
3edyA02 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.58 51.0 3.43e-01 100.0% 71.0%
2z67A00 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.58 50.0 3.31e-01 100.0% 31.4%
2e28A03 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.58 43.0 3.82e-01 79.3% 57.8%
2aamC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 52.0 3.66e-01 100.0% 44.1%
1r6uA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 44.0 3.26e-01 83.7% 51.6%
4xqcA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 50.0 4.11e-01 100.0% 86.0%
3lk7A03 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.57 46.0 4.15e-01 97.8% 61.9%
4dadA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 50.0 4.54e-01 100.0% 84.4%
5t3yA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 50.0 4.55e-01 100.0% 86.4%
3focA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 44.0 3.13e-01 83.7% 47.1%
1j1uA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 42.0 3.33e-01 79.3% 48.5%
3rc1A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 50.0 4.53e-01 100.0% 96.8%
3hzrA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 43.0 3.16e-01 83.7% 36.9%
2a67B00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.56 47.0 3.97e-01 96.7% 98.8%
3abiA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 48.0 4.03e-01 100.0% 71.5%
4gvlA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 47.0 4.20e-01 95.7% 85.3%
3fleA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 48.0 3.59e-01 98.9% 96.3%
3pvsB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 48.0 4.12e-01 100.0% 60.3%
7clgA01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.55 43.0 3.43e-01 85.9% 45.8%
5fclE01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.54 41.0 4.20e-01 81.5% 88.9%
1jilA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 42.0 3.22e-01 83.7% 49.8%
3oj0A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 47.0 4.16e-01 98.9% 80.4%
3tefA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.53 48.0 4.61e-01 97.8% 98.1%
1r6vA03 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.53 46.0 3.21e-01 100.0% 64.3%
4bj1A02 3.40.50.12060 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 46.0 4.03e-01 100.0% 87.8%
1gpjA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 46.0 3.97e-01 100.0% 85.1%
3cr8C02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 40.0 3.20e-01 83.7% 71.2%
2ynmC03 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.52 37.0 3.36e-01 73.9% 70.7%
3aekA03 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.52 36.0 3.35e-01 73.9% 70.7%
4mx8A02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.51 46.0 4.30e-01 98.9% 98.2%
1fnnA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 3.66e-01 100.0% 69.0%
4da2A02 3.40.1350.60 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.50 41.0 3.52e-01 89.1% 70.4%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4563309 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.69 60.0 4.36e-01 95.7% 57.0%
4338908 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.69 60.0 4.42e-01 96.7% 60.4%
4288291 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.67 59.0 4.44e-01 98.9% 63.8%
3627376 2002.1.1.21 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PI-PLC-X 0.67 60.0 4.13e-01 100.0% 53.0%
144257 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.66 59.0 4.37e-01 100.0% 62.0%
None 0.66 59.0 4.35e-01 100.0% 61.2%
4198778 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.66 60.0 4.28e-01 100.0% 48.7%
4972566 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.66 45.0 4.12e-01 79.3% 53.3%
4959227 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.66 45.0 4.02e-01 79.3% 50.0%
None 0.65 57.0 4.31e-01 100.0% 63.6%
4373891 2002.1.1.291 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TIM-barrel_MTC6 0.65 58.0 3.79e-01 100.0% 46.2%
4402217 2002.1.1.291 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TIM-barrel_MTC6 0.64 57.0 4.17e-01 100.0% 68.5%
4483471 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.64 56.0 4.07e-01 98.9% 57.0%
2801111 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.64 43.0 3.89e-01 79.3% 49.6%
4007333 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.63 45.0 4.06e-01 83.7% 53.1%
3956639 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.63 55.0 4.25e-01 95.7% 87.7%
1875524 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.63 55.0 4.57e-01 97.8% 97.0%
3602536 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.62 45.0 4.21e-01 83.7% 60.0%
3963509 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.62 45.0 4.01e-01 83.7% 53.1%
4963544 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.61 44.0 3.96e-01 83.7% 53.8%
4326894 7512.1.1.10 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 0.61 53.0 4.32e-01 97.8% 94.3%
4972358 7512.1.1.54 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Alg14 0.60 54.0 4.48e-01 100.0% 98.8%
4361571 2002.1.1.132 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GcpE 0.60 50.0 3.47e-01 92.4% 91.7%
3263142 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.60 52.0 3.55e-01 100.0% 43.1%
3963662 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.59 51.0 4.35e-01 96.7% 100.0%
5041128 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.59 46.0 4.08e-01 82.6% 60.0%
4937406 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.59 46.0 4.05e-01 83.7% 58.5%
4990041 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.59 50.0 4.05e-01 95.7% 90.3%
4238751 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.59 43.0 3.91e-01 79.3% 57.7%
4959854 2002.1.1.76 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DeoC 0.59 52.0 3.74e-01 100.0% 34.3%
5074235 7545.1.1.1 a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.58 52.0 4.78e-01 97.8% 87.3%
4935104 2002.1.1.28 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PRAI 0.58 52.0 3.96e-01 100.0% 48.2%
4955605 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.58 43.0 3.66e-01 79.3% 99.4%
5061978 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.58 48.0 3.85e-01 93.5% 98.9%
5056523 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.57 49.0 4.29e-01 94.6% 100.0%
4041865 3239.1.1.1 alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.57 41.0 2.79e-01 90.2% 20.3%
4974498 2003.1.12.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › UDPG/MGDP dehydrogenase C-terminal domain › UDPG_MGDP_dh_C 0.57 50.0 4.42e-01 98.9% 87.1%
5071407 7545.1.1.2 a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrH 0.56 50.0 4.75e-01 97.8% 86.4%
4007429 2003.1.7.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › DeoRC 0.56 49.0 3.90e-01 100.0% 81.9%
2140850 2005.1.1.2 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.56 42.0 3.27e-01 80.4% 48.1%
4985643 7545.1.1.1 a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.56 50.0 4.69e-01 98.9% 87.8%
4150036 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.55 42.0 3.79e-01 83.7% 59.0%
2402640 7512.1.1.32 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.55 47.0 3.60e-01 100.0% 60.9%
4947316 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.53 42.0 3.77e-01 88.0% 60.9%
3787733 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 45.0 3.24e-01 100.0% 41.6%
4974618 2006.1.4.54 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Mut7-C 0.52 40.0 3.28e-01 98.9% 43.4%
3924748 2007.1.14.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.52 39.0 3.67e-01 100.0% 64.3%
2050562 2007.1.14.5 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Peripla_BP_2 0.52 47.0 3.99e-01 100.0% 87.2%
2101396 2003.1.7.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › Mal_decarbox_Al 0.52 44.0 3.45e-01 98.9% 94.0%
2511299 2003.1.1.80 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › FAS_pseudo-KR 0.50 45.0 4.15e-01 98.9% 83.8%
D2 medium residues 93-148
PDB