←Back to structures
S27_BME27_1069154_prodigal-single.1__X__X__00527
Bact-VirS27_BME27_1069154_prodigal-single.1__X__X__00527
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-124_349-381
Domain cluster:
rep: LR881104.1__CAD5236280.1__LLCLJKAH_00291__00291__D3-121_248-259
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10127.16 best | RlaP | 48.1 | 1.70e-12 | 81.7% | 40.6% |
D2
medium
residues 156-264
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5lbmA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.75 | 33.0 | 3.79e-01 | 84.4% | 56.6% |
| 2oduA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 33.0 | 3.41e-01 | 84.4% | 55.2% |
| 4lwsA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.61 | 32.0 | 3.34e-01 | 80.7% | 56.0% |
| 2zshB00 | 1.10.10.1290 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transcriptional regulator DELLA, N-terminal domain | 0.56 | 25.0 | 3.29e-01 | 78.9% | 76.3% |
| 3kcuD00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.56 | 39.0 | 2.97e-01 | 71.6% | 91.1% |
| 3bulA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.55 | 30.0 | 3.37e-01 | 72.5% | 65.5% |
| 3q5dA02 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.54 | 37.0 | 3.90e-01 | 76.1% | 78.4% |
| 1icrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.53 | 44.0 | 3.57e-01 | 92.7% | 56.5% |
| 4id0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 31.0 | 3.12e-01 | 84.4% | 56.2% |
| 3lwjA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 39.0 | 3.24e-01 | 81.7% | 50.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3925910 | 604.12.1.5 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › SUV3_C | 0.74 | 27.0 | 3.37e-01 | 85.3% | 51.4% |
| 3950461 | 3826.1.1.1 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Trns_repr_metal | 0.74 | 33.0 | 3.47e-01 | 80.7% | 47.0% |
| 3593891 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.68 | 31.0 | 3.56e-01 | 80.7% | 56.5% |
| 3237761 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.64 | 31.0 | 3.29e-01 | 80.7% | 51.0% |
| 3394510 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.60 | 27.0 | 3.09e-01 | 72.5% | 56.2% |
| 1954342 | 3826.1.1.1 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Trns_repr_metal | 0.57 | 33.0 | 3.66e-01 | 100.0% | 71.9% |
| 3588832 | 2485.1.1.42 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_5 | 0.56 | 35.0 | 2.94e-01 | 79.8% | 34.5% |
| 4927417 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.50 | 35.0 | 2.78e-01 | 72.5% | 90.4% |