←Back to structures

S27_BME27_629333_prodigal-single.1XX__00030

Bact-Vir

S27_BME27_629333_prodigal-single.1__X__X__00030

Identity

Kingdom:: phage

Quality

79.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 112-189

PDB

Domain cluster: rep: NC_027299.1__YP_009146220.1__SUFP_046__00046__D4-101

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF10544.16 best	T5orf172	30.1	8.00e-07	97.4%	71.4%
PF13455.13	MUG113	42.0	1.50e-10	78.2%	86.3%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ln0A00	3.40.1440.10	Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease	0.69	53.0	5.05e-01	82.1%	95.7%
1mw7A02	3.30.70.980	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain	0.55	43.0	4.16e-01	84.6%	96.6%
2qsdB02	3.50.100.10	Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain	0.53	38.0	3.81e-01	83.3%	75.6%
4ig1A00	3.10.520.10	Alpha Beta › Roll › T-fold › ApbE-like domains	0.53	39.0	2.60e-01	79.5%	81.4%
1vrmA01	3.10.520.10	Alpha Beta › Roll › T-fold › ApbE-like domains	0.52	38.0	2.89e-01	80.8%	74.5%
3lupA01	3.40.50.10170	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.51	44.0	3.61e-01	100.0%	93.5%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3946107	821.1.1.3 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172	0.85	79.0	7.36e-01	100.0%	94.7%
3989300	821.1.1.3 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172	0.80	73.0	6.48e-01	100.0%	89.1%
3496147	821.1.1.0 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease	0.80	61.0	5.59e-01	80.8%	99.0%
3613416	821.1.1.3 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172	0.80	73.0	6.25e-01	100.0%	74.2%
4016088	821.1.1.3 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172	0.79	72.0	6.47e-01	100.0%	91.4%
3597677	821.1.1.0 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease	0.78	71.0	6.38e-01	100.0%	84.8%
3271713	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.59	41.0	4.28e-01	73.1%	100.0%
3786945	4007.1.1.1 ↗	a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg	0.58	45.0	4.28e-01	84.6%	89.5%
3485761	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.58	41.0	3.18e-01	75.6%	95.6%
4487057	4007.1.1.1 ↗	a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg	0.55	43.0	4.17e-01	84.6%	92.2%
4990500	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.55	39.0	3.84e-01	76.9%	92.2%
4150387	4007.1.1.1 ↗	a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg	0.54	42.0	4.12e-01	84.6%	97.6%
4223331	306.3.1.0 ↗	a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like	0.52	45.0	4.17e-01	100.0%	86.7%
3397043	306.5.1.0 ↗	a+b two layers › Glucose permease domain IIB-like › GTP cyclohydrolase I feedback regulatory protein, GFRP › GTP cyclohydrolase I feedback regulatory protein, GFRP	0.52	37.0	3.73e-01	75.6%	98.8%
5032459	101.1.2.297 ↗	alpha arrays › HTH › HTH › winged helix domain › Mrr_N	0.51	41.0	4.12e-01	100.0%	87.5%
3416551	4007.1.1.0 ↗	a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins	0.51	39.0	3.95e-01	85.9%	96.2%

D2 medium residues 2-83

PDB

Domain cluster: representative