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S27_BME27_629333_prodigal-single.1__X__X__00042
Bact-VirS27_BME27_629333_prodigal-single.1__X__X__00042
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-64
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.68 | 40.0 | 2.58e-01 | 100.0% | 11.4% |
| 3bzvB00 | 3.40.1690.10 | Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU | 0.68 | 54.0 | 4.43e-01 | 100.0% | 46.3% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.61 | 54.0 | 4.42e-01 | 100.0% | 82.6% |
| 6ko5A02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.61 | 46.0 | 2.78e-01 | 86.8% | 57.9% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 50.0 | 3.89e-01 | 100.0% | 81.2% |
| 8eg0B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 41.0 | 2.39e-01 | 71.1% | 23.1% |
| 3fkdA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 49.0 | 3.67e-01 | 100.0% | 74.1% |
| 2j8aA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 44.0 | 3.74e-01 | 100.0% | 82.8% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.58 | 47.0 | 3.71e-01 | 100.0% | 77.2% |
| 2jvzA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.57 | 48.0 | 3.85e-01 | 100.0% | 87.5% |
| 3delB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 45.0 | 3.11e-01 | 89.5% | 78.4% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.57 | 48.0 | 3.21e-01 | 100.0% | 38.9% |
| 3g8qA02 | 3.30.70.1940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 42.0 | 3.62e-01 | 100.0% | 83.7% |
| 4rgyA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 48.0 | 2.95e-01 | 100.0% | 40.5% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.55 | 45.0 | 2.98e-01 | 100.0% | 58.7% |
| 4cbgD02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 40.0 | 2.69e-01 | 81.6% | 35.4% |
| 4qclA02 | 3.30.70.2820 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 43.0 | 3.18e-01 | 100.0% | 31.5% |
| 3n5oA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 42.0 | 3.40e-01 | 100.0% | 41.6% |
| 3es6B00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.00e-01 | 92.1% | 79.7% |
| 2hvfA00 | 3.40.5.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain | 0.54 | 42.0 | 3.87e-01 | 92.1% | 98.1% |
| 3ezjA03 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.53 | 43.0 | 3.97e-01 | 100.0% | 98.2% |
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 44.0 | 3.27e-01 | 100.0% | 40.0% |
| 3h95A02 | 4.10.80.100 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › | 0.51 | 36.0 | 3.68e-01 | 94.7% | 93.3% |
| 3ephA03 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.51 | 40.0 | 3.66e-01 | 100.0% | 63.0% |
| 2xguB00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.51 | 44.0 | 3.07e-01 | 100.0% | 60.4% |
| 2b9dA01 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 42.0 | 4.22e-01 | 97.4% | 92.3% |
| 3sm4A00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.50 | 42.0 | 2.65e-01 | 100.0% | 46.2% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4961820 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.73 | 59.0 | 5.17e-01 | 100.0% | 60.0% |
| 3416854 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.67 | 41.0 | 2.61e-01 | 100.0% | 12.0% |
| 4187027 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.66 | 55.0 | 3.74e-01 | 100.0% | 72.0% |
| 4482855 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.62 | 51.0 | 4.59e-01 | 92.1% | 100.0% |
| 3426409 | 3256.1.1.0 ↗ | a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain | 0.62 | 43.0 | 4.53e-01 | 81.6% | 96.7% |
| 4078674 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.61 | 50.0 | 4.44e-01 | 97.4% | 98.3% |
| 4126322 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.61 | 48.0 | 4.12e-01 | 89.5% | 84.6% |
| 5014980 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.61 | 47.0 | 3.42e-01 | 100.0% | 28.7% |
| 3674397 | 2485.1.1.82 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › ATP-synt_10 | 0.59 | 48.0 | 3.58e-01 | 89.5% | 95.8% |
| 4061942 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.59 | 44.0 | 3.04e-01 | 100.0% | 24.8% |
| 5030555 | 3433.1.1.0 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain | 0.58 | 43.0 | 4.31e-01 | 94.7% | 80.0% |
| 5010744 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.57 | 46.0 | 4.06e-01 | 100.0% | 96.9% |
| 4931277 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.57 | 47.0 | 3.10e-01 | 92.1% | 27.7% |
| 3695010 | 3435.1.1.3 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-L | 0.55 | 50.0 | 3.04e-01 | 100.0% | 32.4% |
| 3473573 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.54 | 45.0 | 3.63e-01 | 100.0% | 82.5% |
| 3755165 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.54 | 45.0 | 3.77e-01 | 100.0% | 95.7% |
| 4271107 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.54 | 43.0 | 3.17e-01 | 94.7% | 54.8% |
| 3880741 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 38.0 | 3.44e-01 | 78.9% | 96.4% |
| 3273119 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.52 | 45.0 | 2.82e-01 | 100.0% | 41.8% |
| 1153578 | 75.1.1.1 ↗ | beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Pro_isomerase | 0.52 | 42.0 | 3.60e-01 | 100.0% | 97.1% |
| 5016748 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.52 | 46.0 | 3.20e-01 | 100.0% | 62.5% |