Back to structures

S27_BME27_629333_prodigal-single.1__X__X__00072

Bact-Vir

S27_BME27_629333_prodigal-single.1__X__X__00072

Identity

Kingdom:
phage

Quality

91.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-85
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dlbA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.67 53.0 4.10e-01 85.0% 85.1%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 48.0 3.91e-01 76.2% 63.1%
2jwkA00 3.30.420.270 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.64 52.0 5.42e-01 87.5% 100.0%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 44.0 4.02e-01 72.5% 96.2%
1tufA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.63 49.0 3.75e-01 83.7% 73.6%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 44.0 4.09e-01 77.5% 88.8%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 43.0 3.95e-01 76.2% 88.2%
4c23B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 47.0 3.43e-01 86.3% 93.2%
1wv8A00 3.30.2390.10 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › TTHA1013-like 0.60 43.0 4.57e-01 76.2% 97.2%
6jdbA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 46.0 3.74e-01 86.3% 97.4%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.57 36.0 3.27e-01 77.5% 44.1%
1okjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 45.0 4.29e-01 86.3% 78.9%
1maiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.57e-01 76.2% 88.2%
2a6aB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 43.0 3.84e-01 85.0% 96.6%
3cqyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 45.0 3.42e-01 87.5% 86.4%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 39.0 3.33e-01 76.2% 62.8%
2i7nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 43.0 3.52e-01 87.5% 81.3%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.78e-01 77.5% 78.5%
4zfvB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 42.0 3.27e-01 86.3% 90.4%
3qvqA00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.54 45.0 3.24e-01 95.0% 58.2%
1i3pA00 2.60.250.10 Mainly Beta › Sandwich › Baculovirus p35 › Baculovirus p35 0.54 43.0 2.99e-01 87.5% 90.9%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.50e-01 76.2% 71.8%
3ml4A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.58e-01 75.0% 75.0%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.54 32.0 3.63e-01 77.5% 87.0%
5zx8A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.53 43.0 3.35e-01 90.0% 65.6%
3k5bA02 3.30.2320.30 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal 0.53 30.0 2.90e-01 87.5% 46.1%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.53 36.0 3.43e-01 70.0% 100.0%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.75e-01 80.0% 76.3%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 47.0 4.25e-01 100.0% 87.0%
3il4A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 41.0 3.42e-01 86.3% 52.7%
2xbuA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 46.0 3.48e-01 100.0% 45.0%
2f02B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 42.0 2.90e-01 91.3% 32.5%
4dkwA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.52 44.0 3.37e-01 95.0% 50.0%
2h3gX02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 42.0 3.41e-01 91.3% 85.5%
1dhrA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 43.0 3.20e-01 98.8% 75.0%
2agkA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 43.0 3.17e-01 97.5% 50.2%
7w8fA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.51 44.0 3.71e-01 100.0% 76.6%
3t7yA00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.50 41.0 3.98e-01 93.8% 89.4%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 36.0 3.21e-01 77.5% 61.5%
2nrhB02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 42.0 3.44e-01 91.3% 83.3%
1pbyB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 37.0 2.56e-01 81.2% 96.4%
3c1oA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.50 42.0 3.63e-01 93.8% 58.9%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3967679 2484.6.1.1 mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR › ExbD 0.67 54.0 5.02e-01 86.3% 82.0%
4162584 220.1.1.67 beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.65 58.0 4.62e-01 100.0% 80.0%
3971108 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 51.0 4.94e-01 86.3% 93.3%
3228567 2484.1.1.162 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › F-box 0.65 51.0 4.27e-01 86.3% 74.3%
3267918 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 40.0 4.70e-01 90.0% 92.7%
3273863 220.1.1.44 beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.64 50.0 4.67e-01 85.0% 95.0%
184694 2484.6.1.0 mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR 0.64 52.0 5.42e-01 87.5% 100.0%
4568757 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.64 45.0 5.04e-01 80.0% 100.0%
3526919 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.63 46.0 4.36e-01 76.2% 68.4%
4974887 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 56.0 4.73e-01 100.0% 97.8%
3478042 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 43.0 3.79e-01 71.2% 82.5%
3608938 220.1.1.167 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29707 0.62 52.0 4.69e-01 95.0% 77.4%
3855031 220.1.1.167 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29707 0.62 52.0 4.71e-01 93.8% 81.8%
3597564 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 51.0 4.98e-01 93.8% 98.9%
4029601 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 50.0 4.25e-01 88.7% 85.2%
4948406 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.62 42.0 4.60e-01 71.2% 100.0%
3236067 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.61 49.0 3.49e-01 86.3% 39.7%
3611344 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 43.0 3.94e-01 76.2% 87.3%
3245418 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 52.0 4.72e-01 96.2% 94.5%
3509523 220.1.1.167 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29707 0.60 50.0 4.21e-01 93.8% 63.6%
4046244 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.60 45.0 4.12e-01 81.2% 95.5%
2330674 2003.1.10.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N 0.60 37.0 3.31e-01 87.5% 41.9%
3337699 220.1.1.12 beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.60 51.0 4.06e-01 95.0% 69.1%
3711630 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 50.0 4.16e-01 95.0% 73.1%
3230768 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.59 47.0 3.57e-01 87.5% 50.8%
5048184 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.59 45.0 4.42e-01 83.7% 96.7%
4971800 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.58 45.0 3.00e-01 87.5% 20.9%
3602037 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 4.30e-01 96.2% 83.3%
3841716 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.57 43.0 3.49e-01 81.2% 76.1%
4001056 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.57 41.0 3.84e-01 76.2% 81.0%
4990132 309.1.1.15 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › DEAD_assoc 0.57 45.0 3.52e-01 90.0% 96.4%
3266580 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 35.0 2.54e-01 86.3% 21.3%
3263180 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 43.0 3.93e-01 83.7% 80.9%
5075488 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.57 41.0 4.36e-01 77.5% 100.0%
3720049 2484.1.1.191 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RHSP 0.56 44.0 4.03e-01 86.3% 70.0%
328471 220.1.1.63 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NF1 0.56 41.0 3.65e-01 77.5% 70.1%
3398585 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 50.0 4.30e-01 100.0% 94.6%
3714583 2004.1.1.427 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N 0.56 50.0 3.21e-01 98.8% 55.5%
3671443 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 38.0 4.12e-01 85.0% 87.7%
3576021 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 40.0 3.51e-01 77.5% 70.8%
4238164 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.56 43.0 4.40e-01 83.7% 92.0%
1414921 220.1.1.12 beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.56 46.0 3.69e-01 95.0% 64.1%
3928738 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 37.0 3.28e-01 88.7% 47.0%
4562142 136.1.1.1 alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › peroxidase 0.55 37.0 2.51e-01 71.2% 20.0%
3986085 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.54 48.0 4.53e-01 98.8% 89.5%
5040710 2484.1.1.139 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF429 0.54 43.0 3.18e-01 87.5% 95.4%
3941045 7529.1.1.0 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.54 45.0 3.61e-01 100.0% 45.5%
3262203 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.20e-01 78.8% 54.2%
3214129 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 46.0 4.06e-01 100.0% 78.4%
4943735 2004.1.1.120 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII 0.53 44.0 2.62e-01 93.8% 21.0%
4397735 2484.1.1.41 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.53 42.0 3.13e-01 86.3% 73.2%
4340539 2484.1.1.41 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.53 42.0 3.31e-01 86.3% 90.0%
4945492 2003.6.1.0 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like 0.52 42.0 2.88e-01 91.3% 33.2%
5035569 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 41.0 2.89e-01 92.5% 41.3%
3290519 220.1.1.116 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF6585 0.51 37.0 3.78e-01 80.0% 86.3%
3175596 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.51 38.0 2.42e-01 81.2% 94.0%
3789697 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 3.84e-01 97.5% 95.0%