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S27_BME27_629333_prodigal-single.1__X__X__00102

Bact-Vir

S27_BME27_629333_prodigal-single.1__X__X__00102

Identity

Kingdom:
phage

Quality

87.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-194
PDB
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x5yA00 3.90.228.10 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.68 48.0 4.90e-01 100.0% 73.7%
7rb4A01 3.90.175.10 Alpha Beta › Alpha-Beta Complex › Diphtheria Toxin; domain 1 › Diphtheria Toxin, domain 1 0.62 54.0 5.24e-01 94.4% 88.2%
3b82B00 3.90.175.10 Alpha Beta › Alpha-Beta Complex › Diphtheria Toxin; domain 1 › Diphtheria Toxin, domain 1 0.61 55.0 5.21e-01 100.0% 82.1%
1gs0A02 3.90.228.10 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.61 53.0 4.96e-01 100.0% 75.8%
3q9oA03 3.90.175.10 Alpha Beta › Alpha-Beta Complex › Diphtheria Toxin; domain 1 › Diphtheria Toxin, domain 1 0.59 55.0 5.18e-01 100.0% 83.8%
4gv2A02 3.90.228.10 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.55 52.0 4.94e-01 100.0% 96.7%
2rf5A00 3.90.228.10 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.51 48.0 4.55e-01 100.0% 93.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3256269 237.1.1.0 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.77 43.0 5.59e-01 94.4% 93.3%
3905755 237.1.1.0 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.76 52.0 6.16e-01 94.4% 96.2%
3920549 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.75 46.0 4.76e-01 100.0% 65.3%
3252897 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.65 54.0 5.07e-01 100.0% 72.9%
3879371 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.65 47.0 4.74e-01 100.0% 73.3%
3241341 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.65 54.0 5.14e-01 100.0% 75.9%
3239064 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.63 57.0 5.25e-01 100.0% 75.6%
3833168 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.63 55.0 4.60e-01 100.0% 56.6%
3196342 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.63 43.0 4.44e-01 100.0% 72.4%
3798868 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.62 53.0 4.79e-01 100.0% 68.1%
3470627 237.1.1.0 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.62 54.0 4.80e-01 100.0% 66.9%
3798872 237.1.1.0 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.61 53.0 4.85e-01 100.0% 70.4%
3324343 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.61 50.0 4.90e-01 100.0% 78.2%
3185451 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.60 46.0 4.41e-01 100.0% 70.5%
3270835 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.59 54.0 4.93e-01 100.0% 75.4%
3727394 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.57 54.0 4.77e-01 100.0% 91.6%
3258251 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.56 53.0 4.88e-01 100.0% 88.4%
3878517 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.55 52.0 4.82e-01 100.0% 87.6%
D2 high residues 200-285
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.83 51.0 5.54e-01 98.8% 74.6%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 49.0 5.52e-01 98.8% 77.3%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 50.0 5.42e-01 98.8% 73.6%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 47.0 5.90e-01 93.0% 98.1%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 49.0 5.65e-01 100.0% 88.7%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 51.0 5.98e-01 95.3% 96.7%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 49.0 5.76e-01 98.8% 93.2%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 53.0 5.63e-01 100.0% 82.4%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 51.0 5.69e-01 94.2% 88.1%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 48.0 4.88e-01 95.3% 65.1%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 48.0 5.34e-01 100.0% 81.4%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 50.0 4.65e-01 100.0% 58.3%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 45.0 5.19e-01 95.3% 90.3%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.69 46.0 5.32e-01 96.5% 93.7%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.69 63.0 5.45e-01 100.0% 98.5%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 5.08e-01 100.0% 83.8%
1dj7B00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.67 53.0 5.73e-01 97.7% 98.6%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.67 38.0 4.75e-01 89.5% 94.2%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.65 38.0 4.50e-01 89.5% 87.5%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 47.0 5.06e-01 97.7% 89.2%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.65 39.0 4.67e-01 97.7% 92.9%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.64 47.0 4.63e-01 100.0% 72.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.85e-01 100.0% 89.9%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 37.0 4.32e-01 96.5% 91.5%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.58 50.0 4.11e-01 98.8% 53.4%
8a8gA01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.58 42.0 3.62e-01 84.9% 47.1%
2gwlA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.56 44.0 3.41e-01 84.9% 53.0%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.56 48.0 4.76e-01 100.0% 88.9%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.42e-01 100.0% 86.4%
4h03A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.56 44.0 3.33e-01 84.9% 44.6%
1jhdA02 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.54 42.0 3.28e-01 84.9% 37.3%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 33.0 3.67e-01 84.9% 82.8%
3d4rB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 33.0 3.69e-01 82.6% 80.9%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4191690 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.87 49.0 5.98e-01 100.0% 84.5%
4321173 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.87 48.0 5.85e-01 98.8% 82.8%
4084190 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.87 48.0 5.78e-01 98.8% 81.4%
3741680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 51.0 6.31e-01 97.7% 96.4%
3649741 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.82 47.0 5.06e-01 100.0% 66.7%
3339162 4.1.1.330 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.81 47.0 3.97e-01 98.8% 38.5%
3588979 4.1.1.137 beta barrels › SH3 › SH3 › SH3 › PcrA_UvrD_tudor 0.81 48.0 5.79e-01 100.0% 88.1%
3764432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 49.0 5.60e-01 100.0% 81.5%
5029166 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 63.0 6.76e-01 98.8% 94.6%
3510676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 48.0 4.63e-01 98.8% 54.7%
3917372 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.80 49.0 5.29e-01 100.0% 72.0%
2727964 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.79 49.0 5.82e-01 100.0% 91.5%
3999508 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 56.0 6.24e-01 98.8% 91.4%
3660358 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 48.0 5.73e-01 98.8% 90.0%
3627869 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.78 45.0 3.68e-01 100.0% 32.3%
3477037 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 53.0 5.85e-01 94.2% 88.6%
3556601 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.73 48.0 5.52e-01 98.8% 89.2%
3559960 2006.1.6.66 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.73 49.0 5.45e-01 100.0% 85.7%
3901117 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.73 49.0 3.73e-01 97.7% 32.8%
3796759 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.72 42.0 4.11e-01 100.0% 53.7%
3742938 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.72 45.0 5.14e-01 94.2% 84.6%
3503332 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 52.0 5.93e-01 93.0% 100.0%
3936885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 44.0 5.02e-01 97.7% 83.1%
5052256 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 51.0 4.90e-01 100.0% 68.4%
3475429 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 53.0 5.84e-01 100.0% 100.0%
3245032 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 53.0 5.67e-01 98.8% 94.7%
4091791 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 51.0 5.48e-01 98.8% 93.3%
3586562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.69e-01 100.0% 72.9%
3992773 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 40.0 4.96e-01 89.5% 98.2%
538 4.1.1.120 beta barrels › SH3 › SH3 › SH3 › SH3_16 0.65 47.0 5.06e-01 97.7% 89.2%
3267759 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.64 57.0 4.67e-01 100.0% 96.9%
3610097 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.63 59.0 4.91e-01 100.0% 97.9%
3972820 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.48e-01 96.5% 95.0%
3302676 4.1.1.103 beta barrels › SH3 › SH3 › SH3 › SH3_12 0.62 54.0 5.65e-01 97.7% 100.0%
4218142 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.62 38.0 3.64e-01 100.0% 52.0%
3713569 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.48e-01 100.0% 60.0%
3662738 4111.1.1.2 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.61 53.0 4.57e-01 100.0% 86.8%
3454149 4111.1.1.2 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.60 52.0 4.55e-01 100.0% 75.6%
4275696 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.60 42.0 3.65e-01 98.8% 48.5%
3265780 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.59 35.0 4.10e-01 97.7% 85.0%
3842361 1.1.5.76 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.59 49.0 4.83e-01 100.0% 84.2%
4026487 2.1.1.39 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rbc25 0.59 46.0 4.30e-01 86.0% 95.5%
3600113 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 53.0 3.87e-01 100.0% 47.0%
1826884 4.1.1.84 beta barrels › SH3 › SH3 › SH3 › SH3_7 0.57 40.0 4.30e-01 94.2% 84.9%
3639466 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.57 50.0 4.19e-01 100.0% 56.6%
4078549 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.57 43.0 3.55e-01 100.0% 46.0%
3214694 4.1.1.331 beta barrels › SH3 › SH3 › SH3 › DUF4708 0.57 52.0 4.86e-01 100.0% 94.3%
2089783 1167.1.1.0 0.56 29.0 3.13e-01 98.8% 56.6%
4945675 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.56 42.0 3.48e-01 100.0% 46.0%
3758025 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.55 42.0 3.80e-01 100.0% 58.3%
3848483 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.55 44.0 4.29e-01 97.7% 78.6%
5054152 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.55 50.0 4.37e-01 100.0% 76.8%
4932882 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.54 47.0 4.07e-01 100.0% 61.5%
3931160 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 49.0 4.28e-01 100.0% 71.2%
3530890 2004.1.1.402 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CABIT 0.53 46.0 4.59e-01 100.0% 98.9%
3313313 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 39.0 3.59e-01 87.2% 60.9%
4081650 2.1.1.50 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TPP1 0.52 44.0 3.45e-01 95.3% 83.2%
3907178 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 46.0 4.32e-01 100.0% 85.7%
3304525 4.1.1.173 beta barrels › SH3 › SH3 › SH3 › DUF4216 0.51 47.0 4.29e-01 100.0% 82.7%