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S27_BME27_629333_prodigal-single.1__X__X__00244
Bact-VirS27_BME27_629333_prodigal-single.1__X__X__00244
Identity
- Kingdom:
- phage
Quality
84.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-60
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.65 | 51.0 | 4.47e-01 | 100.0% | 57.5% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.62 | 43.0 | 3.79e-01 | 73.2% | 67.1% |
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.59 | 37.0 | 3.63e-01 | 98.2% | 59.0% |
| 1pujA02 | 1.10.1580.10 | Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › | 0.59 | 46.0 | 3.97e-01 | 89.3% | 87.1% |
| 1hjrA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.59 | 48.0 | 3.64e-01 | 100.0% | 53.8% |
| 2g8kA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 41.0 | 3.16e-01 | 80.4% | 43.4% |
| 1kf6A03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.56 | 39.0 | 3.06e-01 | 73.2% | 61.7% |
| 1jb0K00 | 1.20.860.20 | Mainly Alpha › Up-down Bundle › Alpha-t-alpha › Photosystem I PsaK, reaction centre | 0.56 | 36.0 | 3.94e-01 | 91.1% | 82.6% |
| 1qamA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.55 | 47.0 | 4.28e-01 | 100.0% | 75.6% |
| 2xzmV01 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.55 | 38.0 | 3.75e-01 | 83.9% | 67.2% |
| 6ok0B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 39.0 | 3.09e-01 | 76.8% | 48.7% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 41.0 | 3.67e-01 | 96.4% | 57.7% |
| 7nc3F01 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 37.0 | 3.02e-01 | 73.2% | 100.0% |
| 2vyrA00 | 1.10.245.10 | Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain | 0.54 | 44.0 | 4.01e-01 | 100.0% | 67.1% |
| 3nvoB02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.53 | 31.0 | 2.47e-01 | 89.3% | 28.4% |
| 4n81A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.52 | 41.0 | 3.10e-01 | 100.0% | 35.3% |
| 3kh1A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.52 | 42.0 | 2.95e-01 | 92.9% | 62.6% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.52 | 38.0 | 3.47e-01 | 87.5% | 56.8% |
| 3hzsA00 | 1.10.3810.10 | Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like | 0.52 | 41.0 | 2.88e-01 | 92.9% | 28.2% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 38.0 | 3.48e-01 | 85.7% | 67.1% |
| 4pwaD00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.50 | 36.0 | 3.23e-01 | 80.4% | 60.9% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3346039 | 101.35.1.23 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate | 0.68 | 41.0 | 4.24e-01 | 98.2% | 64.2% |
| 3303808 | 605.8.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › Ovate | 0.66 | 40.0 | 4.04e-01 | 96.4% | 60.0% |
| 1066185 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.65 | 50.0 | 5.10e-01 | 100.0% | 90.7% |
| 4026182 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.63 | 51.0 | 3.76e-01 | 100.0% | 50.3% |
| 3173183 | 101.1.2.134 ↗ | alpha arrays › HTH › HTH › winged helix domain › Stn1_C | 0.63 | 50.0 | 4.32e-01 | 100.0% | 55.6% |
| 3432597 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 46.0 | 3.81e-01 | 100.0% | 44.8% |
| 4934256 | 2007.1.11.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains | 0.60 | 46.0 | 3.49e-01 | 100.0% | 32.7% |
| 3966798 | 4019.1.1.4 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S13 | 0.60 | 50.0 | 4.25e-01 | 94.6% | 73.7% |
| 4062718 | 130.1.1.3 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N | 0.60 | 46.0 | 4.75e-01 | 91.1% | 98.0% |
| 4015114 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.59 | 39.0 | 3.21e-01 | 98.2% | 38.0% |
| 3442617 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.56 | 39.0 | 2.80e-01 | 100.0% | 24.7% |
| 5030079 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.55 | 43.0 | 2.52e-01 | 85.7% | 41.0% |
| 3803972 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.55 | 45.0 | 4.27e-01 | 100.0% | 78.6% |
| 4951167 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.53 | 39.0 | 3.77e-01 | 78.6% | 76.9% |
| 3875442 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.53 | 39.0 | 3.45e-01 | 85.7% | 98.9% |
| 3191564 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.53 | 37.0 | 2.24e-01 | 76.8% | 26.6% |
| 4223269 | 101.1.10.50 ↗ | alpha arrays › HTH › HTH › Cyclin-like › PF29928 | 0.53 | 42.0 | 3.12e-01 | 92.9% | 91.3% |
| 4092142 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.52 | 38.0 | 3.80e-01 | 94.6% | 77.6% |
| 3219593 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.52 | 35.0 | 3.35e-01 | 100.0% | 60.0% |
| 3641692 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.52 | 38.0 | 2.79e-01 | 80.4% | 44.7% |