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S27_BME27_629333_prodigal-single.1__X__X__00276

Bact-Vir

S27_BME27_629333_prodigal-single.1__X__X__00276

Identity

Kingdom:
phage

Quality

66.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-57
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.76 65.0 3.88e-01 100.0% 26.9%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.74 64.0 4.33e-01 100.0% 49.7%
2o0aA00 3.40.850.20 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › 0.74 60.0 3.65e-01 92.7% 87.0%
4gkpB00 3.40.850.20 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › 0.72 60.0 3.69e-01 92.7% 91.3%
3s8iA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.72 54.0 3.89e-01 85.4% 96.8%
2nutA02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.72 49.0 4.30e-01 78.0% 47.5%
3f0zA01 3.30.310.260 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.70 56.0 4.27e-01 100.0% 39.3%
6v55A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.69 49.0 3.20e-01 78.0% 47.2%
2dy1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 59.0 3.57e-01 97.6% 62.9%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 58.0 3.35e-01 100.0% 17.7%
4ba0A01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.69 55.0 3.57e-01 90.2% 20.1%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.68 57.0 4.29e-01 97.6% 65.4%
1g8jB00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.68 57.0 4.12e-01 100.0% 59.4%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.68 54.0 4.13e-01 95.1% 44.8%
3l2hA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 57.0 3.89e-01 97.6% 70.7%
3ks7A01 2.60.120.1570 Mainly Beta › Sandwich › Jelly Rolls › Peptide-N-glycosidase F, N-terminal domain 0.67 48.0 3.12e-01 80.5% 75.0%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.66 46.0 3.39e-01 95.1% 28.3%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.64 49.0 3.81e-01 82.9% 51.1%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.64 51.0 3.84e-01 92.7% 95.4%
2knoA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 50.0 3.79e-01 90.2% 72.7%
2hf1A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 50.0 4.68e-01 92.7% 80.0%
1xmtA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 47.0 3.66e-01 82.9% 42.1%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.30e-01 73.2% 95.3%
3mhsA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 46.0 3.36e-01 82.9% 70.1%
4msxA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 50.0 3.94e-01 92.7% 65.6%
5l2qB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.63 46.0 3.01e-01 82.9% 38.9%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 52.0 3.60e-01 100.0% 60.8%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 49.0 3.47e-01 100.0% 62.8%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 50.0 3.57e-01 100.0% 65.7%
3uepA00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.61 43.0 3.55e-01 80.5% 72.9%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 46.0 3.35e-01 100.0% 63.1%
1g3pA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.58 47.0 3.75e-01 95.1% 52.3%
4q6bA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 46.0 3.16e-01 87.8% 40.3%
1xhbA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 47.0 3.45e-01 100.0% 83.6%
1lbvA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 49.0 3.42e-01 97.6% 42.0%
4b9gA00 2.60.40.3480 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 3.21e-01 100.0% 44.5%
3uh8A00 2.60.40.3350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 2.93e-01 80.5% 66.1%
3dsoA00 2.40.10.300 Mainly Beta › Beta Barrel › Thrombin, subunit H › Copper resistance protein K 0.53 46.0 4.00e-01 100.0% 71.2%
1knmA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 42.0 3.17e-01 100.0% 86.0%
1ce7B01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 40.0 3.06e-01 100.0% 76.3%
4a0tA01 6.20.80.10 Special › Other non-globular › Glycosyl hydrolase fold › 0.52 41.0 3.78e-01 97.6% 90.2%
1xezA02 2.70.240.20 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/Hemolysin toxin, cytolysin domain 0.52 39.0 2.39e-01 97.6% 25.3%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.52 42.0 3.40e-01 100.0% 81.3%
5ao6A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 38.0 3.12e-01 90.2% 64.2%
1ggpB02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 39.0 2.99e-01 100.0% 80.0%
1xezA01 3.30.110.130 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hemolytic toxin, N-terminal domain 0.50 38.0 3.23e-01 90.2% 92.6%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3992934 3964.1.1.1 ↗ beta meanders › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE 0.79 59.0 5.09e-01 90.2% 52.3%
5004274 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.78 62.0 5.10e-01 90.2% 64.0%
3597842 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.78 55.0 4.92e-01 80.5% 51.7%
4954562 10.29.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in distal tail protein (Dit)-like proteins › Jelly-roll domain in distal tail protein (Dit)-like proteins 0.77 63.0 4.46e-01 90.2% 67.5%
5032911 5.1.4.43 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.74 63.0 3.66e-01 100.0% 22.7%
5019170 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.73 60.0 4.46e-01 100.0% 34.8%
4261546 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.73 50.0 4.08e-01 70.7% 46.6%
4255854 4294.1.1.8 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › PF27112 0.72 60.0 5.66e-01 95.1% 82.0%
3486200 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.71 60.0 3.43e-01 97.6% 24.7%
3283531 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.70 58.0 3.62e-01 100.0% 29.0%
3789912 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.69 52.0 4.16e-01 82.9% 47.1%
4934604 2003.1.1.22 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.69 55.0 3.28e-01 90.2% 35.6%
3247178 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.69 51.0 4.20e-01 82.9% 50.0%
4068176 2004.1.1.414 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 0.69 58.0 3.49e-01 97.6% 57.2%
26896 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.68 50.0 4.07e-01 82.9% 47.7%
4958164 298.1.1.42 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA 0.68 55.0 3.28e-01 90.2% 36.4%
3475247 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.68 54.0 4.61e-01 90.2% 60.0%
3260511 386.1.1.71 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.68 53.0 4.85e-01 87.8% 65.5%
3550365 331.23.1.2 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › IntS9_C 0.68 58.0 4.77e-01 100.0% 61.5%
3493216 3964.1.1.1 ↗ beta meanders › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE 0.66 53.0 4.60e-01 97.6% 75.7%
4956654 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.66 51.0 3.37e-01 90.2% 59.5%
3519023 3964.1.1.1 ↗ beta meanders › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE 0.66 52.0 4.39e-01 97.6% 63.7%
3663342 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.65 51.0 4.93e-01 92.7% 94.0%
3522043 375.1.1.290 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OCRE 0.65 53.0 4.84e-01 100.0% 90.0%
4506302 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.64 52.0 5.11e-01 95.1% 97.8%
4572115 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.63 51.0 4.73e-01 95.1% 81.8%
5043237 375.1.1.93 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › A2L_zn_ribbon 0.63 43.0 4.72e-01 78.0% 100.0%
4280908 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.62 50.0 4.94e-01 95.1% 97.8%
4996022 3006.1.1.1 ↗ a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Lsm_C 0.62 51.0 4.55e-01 100.0% 67.7%
3234138 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.62 49.0 3.43e-01 92.7% 62.1%
3931038 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.61 48.0 3.47e-01 95.1% 50.4%
4660398 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.61 49.0 4.73e-01 97.6% 94.0%
3595430 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 45.0 2.92e-01 82.9% 19.0%
3799652 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.60 48.0 3.68e-01 90.2% 61.1%
4379527 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.60 43.0 3.49e-01 80.5% 38.8%
3882068 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.59 43.0 4.16e-01 82.9% 68.0%
4930486 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.59 46.0 3.52e-01 82.9% 50.0%
3415669 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.59 47.0 3.46e-01 97.6% 85.6%
2443990 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.58 48.0 3.51e-01 100.0% 83.8%
3511163 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.58 46.0 3.39e-01 95.1% 51.9%
3405778 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.58 45.0 3.09e-01 95.1% 50.6%
3407018 391.1.2.11 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_2nd 0.57 44.0 3.96e-01 100.0% 58.3%
4459347 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.56 41.0 2.73e-01 95.1% 60.8%
3624797 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.56 44.0 2.56e-01 100.0% 18.3%
3219179 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.55 44.0 3.12e-01 97.6% 76.6%
3228008 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.55 46.0 3.33e-01 100.0% 83.1%
3576007 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.55 45.0 3.30e-01 97.6% 82.9%
4023075 5.1.4.383 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › VPS11_N 0.55 41.0 2.61e-01 100.0% 19.4%
3927692 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.55 44.0 3.29e-01 100.0% 83.1%
4012132 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 39.0 3.08e-01 90.2% 83.3%
3925975 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.55 45.0 3.02e-01 100.0% 58.4%
4302902 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.55 45.0 3.29e-01 100.0% 79.2%
3927403 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.53 43.0 3.23e-01 100.0% 83.8%