←Back to structures
S27_BME27_629333_prodigal-single.1__X__X__00356
Bact-VirS27_BME27_629333_prodigal-single.1__X__X__00356
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-79
Domain cluster:
rep: NC_031927.1__YP_009323018.1__BOW86_gp085__00085__D3-79
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01541.31 best | GIY-YIG | 44.9 | 1.60e-11 | 100.0% | 87.2% |
D2
high
residues 154-221
Domain cluster:
rep: IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_10000072181__D164-213
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qh5B00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.65 | 46.0 | 3.08e-01 | 100.0% | 19.5% |
| 1o54A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.59 | 47.0 | 4.70e-01 | 92.6% | 84.7% |
| 2x5pA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 40.0 | 3.45e-01 | 89.7% | 46.2% |
| 1cidA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 38.0 | 3.75e-01 | 94.1% | 62.0% |
| 4kxfL01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 45.0 | 3.26e-01 | 86.8% | 79.3% |
| 3mjqA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 42.0 | 3.70e-01 | 79.4% | 83.2% |
| 4p0dA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 41.0 | 3.41e-01 | 89.7% | 45.2% |
| 3f1sB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 38.0 | 3.41e-01 | 89.7% | 50.5% |
| 4h4nA00 | 2.60.40.3750 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 40.0 | 4.20e-01 | 89.7% | 82.3% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.56 | 40.0 | 4.00e-01 | 89.7% | 72.2% |
| 3volA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 40.0 | 3.24e-01 | 76.5% | 68.8% |
| 3irzA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 39.0 | 3.45e-01 | 91.2% | 50.5% |
| 3fmaA00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.55 | 40.0 | 3.82e-01 | 92.6% | 65.4% |
| 2kfwA01 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.55 | 45.0 | 3.88e-01 | 94.1% | 86.7% |
| 4dt4A01 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.55 | 44.0 | 4.21e-01 | 88.2% | 93.7% |
| 6fwvA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 40.0 | 3.67e-01 | 89.7% | 58.9% |
| 2grgA01 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.54 | 39.0 | 3.71e-01 | 77.9% | 83.1% |
| 4g5aA00 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 37.0 | 3.27e-01 | 89.7% | 48.5% |
| 3pfyA02 | 6.10.20.180 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › | 0.52 | 35.0 | 3.84e-01 | 86.8% | 84.2% |
| 3payC01 | 2.60.40.2100 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 44.0 | 3.27e-01 | 100.0% | 36.8% |
| 1ut9A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 3.56e-01 | 89.7% | 58.2% |
| 5hccB02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.51 | 38.0 | 3.38e-01 | 91.2% | 55.8% |
| 2fkbC00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 41.0 | 3.30e-01 | 98.5% | 65.3% |
| 1oj5A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 35.0 | 3.11e-01 | 72.1% | 92.4% |
| 3ecoB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 35.0 | 2.92e-01 | 82.4% | 38.8% |
| 3kyeA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.50 | 36.0 | 3.10e-01 | 77.9% | 81.5% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4384880 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.81 | 63.0 | 5.83e-01 | 86.8% | 65.9% |
| 4414927 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.76 | 63.0 | 6.27e-01 | 94.1% | 87.0% |
| 4942476 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.65 | 40.0 | 3.85e-01 | 89.7% | 53.8% |
| 3950412 | 11.1.4.130 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF1416 | 0.64 | 40.0 | 3.93e-01 | 89.7% | 58.7% |
| 4256432 | 11.1.4.72 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO1-like_2nd | 0.62 | 40.0 | 3.82e-01 | 91.2% | 56.2% |
| 4319035 | 11.1.1.608 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail | 0.62 | 40.0 | 4.00e-01 | 88.2% | 65.2% |
| 5081326 | 11.1.1.608 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail | 0.61 | 42.0 | 4.32e-01 | 92.6% | 75.4% |
| 5064207 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.60 | 38.0 | 3.33e-01 | 89.7% | 43.0% |
| 5055096 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.60 | 43.0 | 4.11e-01 | 92.6% | 65.0% |
| 5044154 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.60 | 41.0 | 3.71e-01 | 72.1% | 81.7% |
| 5080825 | 11.1.1.608 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail | 0.59 | 41.0 | 3.97e-01 | 92.6% | 65.3% |
| 4980801 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.58 | 39.0 | 3.36e-01 | 91.2% | 44.8% |
| 5023611 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.58 | 41.0 | 3.68e-01 | 73.5% | 80.9% |
| 5055810 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.58 | 41.0 | 3.66e-01 | 73.5% | 77.9% |
| 4991285 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.58 | 41.0 | 3.91e-01 | 92.6% | 63.7% |
| 3925735 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.58 | 44.0 | 3.82e-01 | 98.5% | 53.3% |
| 4406592 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.58 | 40.0 | 3.65e-01 | 73.5% | 81.9% |
| 3798089 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.56 | 40.0 | 3.47e-01 | 94.1% | 48.6% |
| 4961048 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.56 | 41.0 | 3.64e-01 | 92.6% | 54.7% |
| 5032460 | 10.1.2.180 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › EMP24_GP25L | 0.56 | 37.0 | 3.51e-01 | 89.7% | 57.5% |
| 5063052 | 11.1.1.1410 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CarboxypepD_reg | 0.55 | 39.0 | 3.56e-01 | 94.1% | 56.7% |
| 3797412 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 38.0 | 3.49e-01 | 92.6% | 56.7% |
| 4979454 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 39.0 | 3.31e-01 | 91.2% | 48.2% |
| 4464372 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.53 | 41.0 | 3.73e-01 | 82.4% | 87.6% |
| 5036180 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.53 | 41.0 | 3.70e-01 | 83.8% | 80.0% |
| 3598607 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.53 | 37.0 | 3.68e-01 | 89.7% | 71.4% |
| 3839138 | 2004.1.1.36 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N | 0.52 | 41.0 | 2.83e-01 | 88.2% | 69.2% |
| 5046988 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.52 | 42.0 | 3.73e-01 | 85.3% | 84.0% |
| 4933077 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.51 | 40.0 | 3.61e-01 | 85.3% | 84.2% |
| 4144066 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.51 | 40.0 | 3.66e-01 | 85.3% | 88.9% |
| 4961049 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.51 | 37.0 | 3.27e-01 | 77.9% | 70.0% |
| 3972503 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.51 | 42.0 | 3.32e-01 | 89.7% | 47.4% |
| 3487629 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 37.0 | 3.08e-01 | 80.9% | 87.4% |