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S27_BME27_629333_prodigal-single.1__X__X__00376
Bact-VirS27_BME27_629333_prodigal-single.1__X__X__00376
Identity
- Kingdom:
- phage
Quality
89.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-56
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.79 | 65.0 | 5.67e-01 | 100.0% | 61.2% |
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.73 | 64.0 | 5.42e-01 | 100.0% | 80.0% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.73 | 65.0 | 5.45e-01 | 100.0% | 66.2% |
| 1di2A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.72 | 63.0 | 5.46e-01 | 100.0% | 63.8% |
| 7r97A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.72 | 63.0 | 5.48e-01 | 100.0% | 67.6% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.71 | 60.0 | 5.30e-01 | 100.0% | 63.4% |
| 1wxcB01 | 3.30.1880.10 | Alpha Beta › 2-Layer Sandwich › protein ne1242 fold › protein ne1242 domain like | 0.71 | 51.0 | 4.61e-01 | 100.0% | 56.5% |
| 4hnvB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.70 | 59.0 | 3.53e-01 | 100.0% | 38.7% |
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.70 | 60.0 | 5.20e-01 | 100.0% | 62.0% |
| 1a9xA06 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.70 | 60.0 | 3.92e-01 | 100.0% | 70.4% |
| 4fmrA02 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.65 | 39.0 | 3.11e-01 | 100.0% | 30.7% |
| 4bs9A05 | 3.30.160.660 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.65 | 54.0 | 4.14e-01 | 100.0% | 43.0% |
| 3f6gA01 | 3.30.160.740 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 55.0 | 5.09e-01 | 100.0% | 75.9% |
| 3f5rA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 46.0 | 3.47e-01 | 80.0% | 54.0% |
| 3cygA02 | 3.90.640.20 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Heat-shock cognate protein, ATPase | 0.62 | 45.0 | 3.56e-01 | 80.0% | 37.5% |
| 4e72A02 | 3.90.640.20 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Heat-shock cognate protein, ATPase | 0.61 | 44.0 | 3.52e-01 | 80.0% | 39.4% |
| 1w63Q00 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.60 | 48.0 | 3.39e-01 | 100.0% | 27.7% |
| 4qwoB00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.60 | 48.0 | 3.62e-01 | 100.0% | 34.1% |
| 6ewnA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 40.0 | 3.17e-01 | 73.3% | 90.9% |
| 2giaB00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.57 | 48.0 | 3.48e-01 | 100.0% | 59.6% |
| 7bvaA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.57 | 47.0 | 3.06e-01 | 100.0% | 25.2% |
| 6lbtA01 | 2.40.50.810 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 45.0 | 3.25e-01 | 97.8% | 57.7% |
| 3g1pA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 43.0 | 2.80e-01 | 100.0% | 24.5% |
| 1ym0A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 44.0 | 3.42e-01 | 100.0% | 77.7% |
| 1q1rA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.53 | 43.0 | 3.52e-01 | 100.0% | 89.5% |
| 2wylC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 43.0 | 2.69e-01 | 97.8% | 29.9% |
| 2oh1C00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 39.0 | 2.77e-01 | 88.9% | 59.9% |
| 2w3sA04 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 38.0 | 2.86e-01 | 80.0% | 99.1% |
| 4jotA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.51 | 41.0 | 2.77e-01 | 97.8% | 98.1% |
| 1q25A01 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.51 | 42.0 | 3.18e-01 | 100.0% | 39.2% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4966382 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.82 | 64.0 | 5.72e-01 | 100.0% | 60.0% |
| 3514663 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.80 | 69.0 | 5.71e-01 | 100.0% | 56.0% |
| 4634689 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.79 | 62.0 | 5.48e-01 | 100.0% | 60.0% |
| 3705943 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.78 | 69.0 | 5.21e-01 | 100.0% | 46.7% |
| 3789856 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.76 | 68.0 | 4.99e-01 | 100.0% | 47.0% |
| 3258455 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.76 | 69.0 | 5.10e-01 | 100.0% | 47.7% |
| 4992542 | 4100.1.1.3 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox | 0.75 | 60.0 | 5.71e-01 | 100.0% | 74.5% |
| 3297925 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.75 | 64.0 | 5.86e-01 | 97.8% | 93.3% |
| 4043415 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.75 | 67.0 | 3.79e-01 | 100.0% | 10.7% |
| 4966362 | 4100.1.1.3 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox | 0.73 | 60.0 | 5.20e-01 | 100.0% | 60.0% |
| 5027828 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.73 | 65.0 | 4.51e-01 | 100.0% | 70.0% |
| 4156749 | 3234.1.1.2 ↗ | a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N | 0.73 | 64.0 | 3.88e-01 | 100.0% | 20.0% |
| 3505247 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.72 | 61.0 | 4.89e-01 | 100.0% | 48.9% |
| 3717185 | 330.1.1.22 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 | 0.71 | 62.0 | 4.25e-01 | 100.0% | 28.7% |
| 5001386 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.71 | 63.0 | 5.06e-01 | 100.0% | 61.2% |
| 3598138 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.71 | 62.0 | 4.47e-01 | 100.0% | 35.4% |
| 4040354 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.70 | 61.0 | 5.22e-01 | 100.0% | 61.3% |
| 3915668 | 330.1.1.19 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 | 0.70 | 62.0 | 4.94e-01 | 100.0% | 52.2% |
| 3610976 | 330.1.1.22 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 | 0.70 | 60.0 | 4.78e-01 | 100.0% | 49.5% |
| 4528517 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.69 | 51.0 | 5.10e-01 | 86.7% | 80.0% |
| 3287181 | 330.10.1.0 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain | 0.68 | 58.0 | 4.69e-01 | 100.0% | 52.2% |
| 5003996 | 330.10.1.0 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain | 0.68 | 57.0 | 4.50e-01 | 100.0% | 48.0% |
| 4952831 | 330.10.1.1 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO | 0.68 | 56.0 | 4.62e-01 | 100.0% | 55.6% |
| 4935879 | 330.10.1.1 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO | 0.67 | 55.0 | 4.55e-01 | 100.0% | 53.3% |
| 3962819 | 330.1.1.35 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › LeuA_dimer | 0.67 | 56.0 | 5.46e-01 | 95.6% | 90.0% |
| 3967100 | 2003.1.5.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth | 0.64 | 44.0 | 2.80e-01 | 100.0% | 13.8% |
| 5003452 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.64 | 44.0 | 3.28e-01 | 75.6% | 31.5% |
| 5041293 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 47.0 | 3.81e-01 | 82.2% | 91.1% |
| 4028300 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 45.0 | 3.43e-01 | 77.8% | 39.1% |
| 169498 | 220.1.1.44 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N | 0.63 | 46.0 | 3.49e-01 | 80.0% | 55.0% |
| 4528690 | 7503.1.1.21 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF30731 | 0.60 | 50.0 | 3.89e-01 | 100.0% | 42.7% |
| 4101478 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.59 | 42.0 | 2.97e-01 | 75.6% | 32.4% |
| 3571049 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.59 | 49.0 | 4.05e-01 | 97.8% | 90.6% |
| 4648965 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.59 | 43.0 | 2.65e-01 | 80.0% | 10.9% |
| 3977405 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.58 | 48.0 | 3.76e-01 | 100.0% | 43.0% |
| 3940020 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 49.0 | 3.58e-01 | 100.0% | 35.4% |
| 3938447 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.57 | 46.0 | 3.29e-01 | 100.0% | 31.5% |
| 4489855 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.56 | 47.0 | 4.01e-01 | 100.0% | 68.4% |
| 3783571 | 3257.1.1.1 ↗ | a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N | 0.56 | 40.0 | 2.64e-01 | 80.0% | 17.7% |
| 3663555 | 7512.1.1.4 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_10 | 0.56 | 47.0 | 2.80e-01 | 100.0% | 15.6% |
| 3694155 | 2004.1.1.45 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V | 0.55 | 37.0 | 2.26e-01 | 71.1% | 30.8% |
| 3626375 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.55 | 45.0 | 4.03e-01 | 100.0% | 68.6% |
| 3850166 | 389.1.3.23 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › PF28896 | 0.54 | 39.0 | 3.56e-01 | 82.2% | 55.4% |
| 5010613 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.51 | 39.0 | 3.51e-01 | 84.4% | 76.9% |
| 3486431 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.51 | 40.0 | 2.53e-01 | 93.3% | 76.2% |