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S27_BME27_629333_prodigal-single.1__X__X__00465

Bact-Vir

S27_BME27_629333_prodigal-single.1__X__X__00465

Identity

Kingdom:
phage

Quality

65.4 mean pLDDT

Cluster

View cluster (7 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 134-249
PDB
Domain cluster: rep: SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00059__D195-308
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26926.1 best Phage_T4_rIIB 73.3 2.80e-20 87.1% 19.8%
D2 high residues 333-415
PDB
Domain cluster: rep: MT732457.1__QQV90475.1__Harreka1_68__00068__D5-80
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00550.32 best PP-binding 52.6 6.10e-14 85.5% 94.0%
D3 medium residues 3-108
PDB
Domain cluster: rep: rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00496__D4-100
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ml8A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 22.0 3.57e-01 85.8% 91.2%
1vlaA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 21.0 3.37e-01 84.9% 83.3%
4gnxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 30.0 3.05e-01 87.7% 47.2%
2dgyA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 30.0 3.41e-01 85.8% 65.8%
5lm7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 32.0 3.72e-01 87.7% 75.6%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.57 24.0 3.15e-01 92.5% 69.1%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 32.0 3.72e-01 85.8% 83.6%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 36.0 3.60e-01 85.8% 67.0%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 30.0 3.32e-01 85.8% 68.8%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 32.0 3.41e-01 85.8% 70.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3265851 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.63 22.0 3.38e-01 84.9% 77.5%
5016260 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.62 26.0 3.42e-01 86.8% 67.8%
4940177 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 27.0 3.27e-01 84.0% 64.3%
4178260 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.54 30.0 3.31e-01 84.9% 65.9%
4964699 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.54 30.0 3.09e-01 84.0% 56.0%
4626642 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 31.0 3.50e-01 87.7% 76.2%
3223806 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.52 38.0 2.61e-01 79.2% 30.1%
4930437 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.51 28.0 2.89e-01 84.0% 53.3%
4683204 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.51 38.0 3.83e-01 80.2% 81.0%