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S27_BME27_629333_prodigal-single.1__X__X__00514
Bact-VirS27_BME27_629333_prodigal-single.1__X__X__00514
Identity
- Kingdom:
- phage
Quality
86.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-158
Domain cluster:
rep: STL6-S73_scaffold_1_prodigal-single.1__X__X__00333__D7-82_124-188
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20194.5 best | DUF6557 | 31.9 | 2.00e-07 | 97.4% | 57.6% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6pmiF01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.63 | 30.0 | 4.03e-01 | 96.8% | 86.3% |
| 1jvmB00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 24.0 | 2.99e-01 | 93.6% | 67.0% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.52 | 27.0 | 3.47e-01 | 97.4% | 90.2% |
| 1jcfA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.52 | 24.0 | 3.28e-01 | 93.6% | 86.8% |
| 1ez0B01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.50 | 39.0 | 3.12e-01 | 80.8% | 74.4% |
D2
medium
residues 178-215
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ntxA01 | 1.20.58.2010 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 | 0.76 | 54.0 | 3.39e-01 | 78.9% | 81.9% |
| 1vq0A02 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.75 | 56.0 | 4.99e-01 | 86.8% | 56.1% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 57.0 | 4.15e-01 | 84.2% | 65.0% |
| 1adoA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.74 | 46.0 | 2.64e-01 | 81.6% | 6.6% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.70 | 50.0 | 3.19e-01 | 76.3% | 59.7% |
| 4em2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 52.0 | 3.45e-01 | 81.6% | 43.3% |
| 4nnaA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.69 | 55.0 | 3.18e-01 | 86.8% | 64.0% |
| 2nyxB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 51.0 | 3.50e-01 | 84.2% | 47.9% |
| 2kloA00 | 1.10.10.1420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain | 0.68 | 44.0 | 2.99e-01 | 89.5% | 18.1% |
| 4q0cA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.67 | 46.0 | 3.07e-01 | 73.7% | 29.0% |
| 5dymA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 48.0 | 3.69e-01 | 84.2% | 78.1% |
| 2l6lA02 | 3.10.660.10 | Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger | 0.64 | 44.0 | 3.80e-01 | 78.9% | 43.1% |
| 2lezA00 | 3.30.2450.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 | 0.64 | 47.0 | 3.57e-01 | 94.7% | 30.8% |
| 3pc3A03 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.64 | 48.0 | 3.44e-01 | 94.7% | 67.4% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 46.0 | 3.52e-01 | 84.2% | 72.8% |
| 7z8iC01 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.63 | 45.0 | 3.69e-01 | 86.8% | 37.0% |
| 4lmoA00 | 1.10.132.70 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.62 | 51.0 | 3.16e-01 | 100.0% | 64.9% |
| 6l3tA01 | 1.20.1440.80 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain | 0.62 | 48.0 | 3.09e-01 | 86.8% | 19.6% |
| 4zyaB00 | 3.30.1910.20 | Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain | 0.61 | 41.0 | 3.16e-01 | 89.5% | 35.5% |
| 4l63A00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.60 | 50.0 | 3.06e-01 | 94.7% | 43.0% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 41.0 | 3.22e-01 | 84.2% | 70.5% |
| 1c0gA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.58 | 47.0 | 3.71e-01 | 100.0% | 45.7% |
| 2kqrA01 | 3.30.1910.20 | Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain | 0.58 | 43.0 | 3.60e-01 | 84.2% | 47.3% |
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 50.0 | 3.28e-01 | 94.7% | 36.5% |
| 1ogyA02 | 3.40.50.740 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 47.0 | 2.80e-01 | 89.5% | 14.2% |
| 6ui4A01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.58 | 46.0 | 3.66e-01 | 97.4% | 78.4% |
| 3uh0A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.56 | 48.0 | 3.36e-01 | 97.4% | 29.0% |
| 1zhvA00 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.56 | 42.0 | 3.05e-01 | 84.2% | 83.6% |
| 1iyjB03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 39.0 | 2.75e-01 | 84.2% | 19.7% |
| 3oxnA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 41.0 | 3.03e-01 | 86.8% | 40.9% |
| 5suvC00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.55 | 45.0 | 3.07e-01 | 89.5% | 36.8% |
| 4gj1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 38.0 | 2.50e-01 | 89.5% | 14.4% |
| 1wadA00 | 3.90.10.10 | Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 | 0.54 | 39.0 | 3.03e-01 | 89.5% | 33.3% |
| 2y3mA02 | 3.30.1370.130 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.54 | 40.0 | 3.47e-01 | 78.9% | 55.4% |
| 2jfdA03 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.53 | 45.0 | 3.75e-01 | 94.7% | 84.8% |
| 2ctfA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.53 | 46.0 | 3.32e-01 | 97.4% | 72.5% |
| 6lydA01 | 3.40.470.10 | Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain | 0.52 | 43.0 | 2.69e-01 | 100.0% | 17.4% |
| 2ebnA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 40.0 | 2.44e-01 | 89.5% | 23.2% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.50 | 38.0 | 3.38e-01 | 84.2% | 82.5% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3962772 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.78 | 62.0 | 4.23e-01 | 92.1% | 26.4% |
| 4963143 | 2008.1.1.228 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF5787 | 0.74 | 58.0 | 3.74e-01 | 89.5% | 20.0% |
| 3882098 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.73 | 62.0 | 3.77e-01 | 94.7% | 16.1% |
| 3961555 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.72 | 60.0 | 4.01e-01 | 100.0% | 80.0% |
| 4022416 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.70 | 44.0 | 3.00e-01 | 100.0% | 18.5% |
| 5011613 | 101.1.2.225 ↗ | alpha arrays › HTH › HTH › winged helix domain › F-93_WHD | 0.69 | 50.0 | 3.82e-01 | 81.6% | 68.4% |
| 4938227 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.66 | 49.0 | 3.62e-01 | 84.2% | 65.5% |
| 5077836 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 45.0 | 3.29e-01 | 86.8% | 28.4% |
| 3423947 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.64 | 48.0 | 2.87e-01 | 81.6% | 14.0% |
| 3719561 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.64 | 47.0 | 2.86e-01 | 84.2% | 11.8% |
| 4945099 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 45.0 | 3.30e-01 | 84.2% | 60.8% |
| 3919983 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.62 | 49.0 | 2.98e-01 | 92.1% | 76.9% |
| 4022652 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 49.0 | 2.96e-01 | 92.1% | 99.3% |
| 4155057 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.61 | 46.0 | 3.52e-01 | 81.6% | 60.0% |
| 5051998 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.60 | 46.0 | 3.15e-01 | 86.8% | 23.7% |
| 5028056 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.59 | 44.0 | 3.94e-01 | 94.7% | 55.0% |
| 3521093 | 3532.1.1.1 ↗ | alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase › Telomerase_RBD | 0.59 | 48.0 | 2.94e-01 | 100.0% | 68.0% |
| 4250106 | 101.1.2.274 ↗ | alpha arrays › HTH › HTH › winged helix domain › SgrR_N | 0.58 | 53.0 | 3.15e-01 | 100.0% | 29.4% |
| 3482589 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.58 | 43.0 | 2.74e-01 | 86.8% | 14.5% |
| 4985063 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.58 | 46.0 | 3.96e-01 | 86.8% | 96.6% |
| 4457765 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.57 | 45.0 | 2.75e-01 | 86.8% | 12.0% |
| 4031161 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.57 | 40.0 | 3.13e-01 | 84.2% | 67.3% |
| 3508428 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 43.0 | 2.89e-01 | 94.7% | 19.4% |
| 3165734 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.56 | 39.0 | 3.42e-01 | 100.0% | 42.3% |
| 3737932 | 3532.1.1.1 ↗ | alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase › Telomerase_RBD | 0.56 | 42.0 | 2.65e-01 | 94.7% | 62.0% |
| 3242948 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.56 | 42.0 | 2.60e-01 | 84.2% | 14.2% |
| 4928786 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.55 | 43.0 | 2.75e-01 | 94.7% | 16.7% |
| 4927593 | 136.1.1.0 ↗ | alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases | 0.53 | 38.0 | 2.51e-01 | 97.4% | 14.6% |
| 4932062 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.53 | 39.0 | 3.02e-01 | 81.6% | 67.0% |