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S2_003_000_R3_scaffold_4_prodigal-single.1__X__X__00074

Bact-Vir

S2_003_000_R3_scaffold_4_prodigal-single.1__X__X__00074

Identity

Kingdom:
phage

Quality

81.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-112
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02599.22 best CsrA 39.5 6.20e-10 52.0% 88.7%
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.79 72.0 6.02e-01 97.1% 86.6%
4k59A00 2.60.40.4380 Mainly Beta › Sandwich › Immunoglobulin-like › Translational regulator CsrA 0.74 46.0 5.84e-01 94.1% 98.5%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.67 53.0 4.50e-01 85.3% 100.0%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.66 49.0 4.41e-01 77.5% 91.5%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 40.0 2.66e-01 93.1% 16.0%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 49.0 4.50e-01 88.2% 96.3%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 49.0 3.87e-01 89.2% 87.3%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 31.0 3.76e-01 93.1% 77.6%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.57 45.0 4.36e-01 85.3% 94.9%
1lj5A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 35.0 3.05e-01 84.3% 40.3%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 50.0 4.24e-01 99.0% 94.2%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 44.0 3.95e-01 82.4% 75.7%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 35.0 3.23e-01 84.3% 48.4%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 48.0 4.45e-01 94.1% 95.4%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 49.0 4.08e-01 100.0% 86.5%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 48.0 4.32e-01 92.2% 89.1%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 35.0 4.22e-01 89.2% 98.5%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 31.0 3.63e-01 92.2% 77.5%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 4.04e-01 90.2% 92.8%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 3.63e-01 93.1% 80.0%
3ebkB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 48.0 4.17e-01 98.0% 96.3%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 4.07e-01 93.1% 94.2%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 48.0 4.16e-01 98.0% 89.0%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.55 44.0 3.14e-01 86.3% 83.3%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.55 42.0 3.81e-01 83.3% 93.8%
3w9aA00 2.60.120.1160 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 3.36e-01 86.3% 92.0%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.55 45.0 4.51e-01 90.2% 100.0%
3mepA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.86e-01 93.1% 60.3%
1ewfA02 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.55 41.0 3.05e-01 79.4% 90.6%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 46.0 4.21e-01 97.1% 95.8%
1e69A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 40.0 3.00e-01 78.4% 92.8%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 35.0 4.06e-01 89.2% 97.1%
3pu2B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 46.0 4.10e-01 97.1% 96.7%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.56e-01 93.1% 77.7%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 45.0 3.75e-01 92.2% 86.3%
1tyeA00 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.54 42.0 2.76e-01 83.3% 69.0%
1inyA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 44.0 3.03e-01 91.2% 85.3%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 48.0 4.13e-01 100.0% 96.3%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 45.0 4.13e-01 94.1% 87.4%
3otlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 45.0 3.96e-01 93.1% 88.2%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 44.0 4.13e-01 93.1% 91.3%
2l5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 3.85e-01 99.0% 92.6%
1noyA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.52 39.0 3.59e-01 79.4% 92.5%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 44.0 4.10e-01 95.1% 90.2%
3zxkA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.45e-01 93.1% 61.6%
2xstA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 4.03e-01 100.0% 99.3%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 42.0 2.97e-01 91.2% 91.5%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 37.0 2.76e-01 75.5% 61.6%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 3.00e-01 92.2% 76.1%
1xn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 44.0 4.02e-01 97.1% 94.2%
1hw7A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.51 41.0 3.56e-01 89.2% 75.1%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 43.0 3.92e-01 97.1% 97.9%
3ijtB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 42.0 3.82e-01 94.1% 91.6%
1pu4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.51 42.0 2.83e-01 91.2% 94.6%
1bqnA05 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 44.0 4.05e-01 96.1% 89.3%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 35.0 3.62e-01 96.1% 77.7%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 31.0 3.80e-01 87.3% 100.0%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 38.0 2.59e-01 80.4% 80.3%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5043037 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.86 74.0 7.53e-01 91.2% 99.0%
4958477 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.78 62.0 6.60e-01 86.3% 94.4%
3556710 9.1.1.24 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.61 49.0 4.58e-01 86.3% 96.9%
3393297 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 40.0 4.40e-01 99.0% 83.7%
3645890 883.1.1.9 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_LBD 0.61 44.0 3.40e-01 76.5% 72.6%
3579468 71.1.1.21 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25897 0.60 50.0 3.83e-01 89.2% 88.3%
3801065 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.60 43.0 3.20e-01 73.5% 61.9%
5017958 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 51.0 4.52e-01 94.1% 87.3%
4210618 3735.1.1.12 beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell 0.59 45.0 3.01e-01 84.3% 29.7%
4464657 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 34.0 3.80e-01 70.6% 72.5%
3831652 71.1.1.17 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF28435 0.58 47.0 4.09e-01 88.2% 82.9%
3798522 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 49.0 4.68e-01 93.1% 86.7%
3279607 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.57 46.0 4.67e-01 87.3% 97.0%
3247995 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.57 31.0 3.61e-01 86.3% 75.7%
3653947 71.1.1.17 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF28435 0.56 46.0 3.88e-01 89.2% 83.3%
853 9.1.1.23 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3598_N 0.56 48.0 4.44e-01 94.1% 94.7%
4157526 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.56 39.0 3.75e-01 98.0% 63.5%
3211215 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 49.0 3.87e-01 99.0% 67.0%
5012403 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 48.0 4.15e-01 99.0% 78.8%
4864730 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.55 46.0 4.42e-01 95.1% 80.9%
5082343 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 44.0 3.37e-01 85.3% 71.3%
4957722 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.55 45.0 4.07e-01 88.2% 97.8%
1169937 71.1.1.4 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › MucB_RseB 0.55 45.0 3.76e-01 91.2% 83.6%
4339003 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.55 46.0 3.42e-01 96.1% 95.3%
5034929 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 43.0 3.38e-01 84.3% 64.5%
3200223 5.1.4.31 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C 0.55 45.0 2.68e-01 92.2% 41.7%
4506585 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.54 38.0 3.29e-01 71.6% 76.8%
4002608 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.54 38.0 2.90e-01 72.5% 59.1%
5037531 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 45.0 2.83e-01 92.2% 43.7%
3163979 71.1.1.4 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › MucB_RseB 0.54 45.0 3.72e-01 92.2% 83.2%
3938949 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 3.79e-01 99.0% 69.0%
4978501 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 45.0 3.97e-01 90.2% 96.0%
3224967 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.54 46.0 3.43e-01 93.1% 50.6%
3597078 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.54 48.0 3.89e-01 100.0% 83.6%
4596967 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 45.0 3.49e-01 93.1% 78.5%
3605378 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.53 40.0 3.96e-01 79.4% 85.5%
2034120 5.1.3.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › CyRPA 0.53 44.0 3.16e-01 91.2% 92.1%
3443454 10.1.1.2 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.53 45.0 3.43e-01 94.1% 74.0%
5043080 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 44.0 4.32e-01 89.2% 98.2%
4030445 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 39.0 2.66e-01 78.4% 26.9%
3716442 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 41.0 2.78e-01 83.3% 84.5%
3033584 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.53 45.0 3.88e-01 96.1% 90.0%
2093820 5.1.3.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.52 44.0 2.93e-01 93.1% 81.3%
3056306 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.52 39.0 2.79e-01 79.4% 50.6%
6331 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 44.0 4.09e-01 95.1% 89.5%
3767975 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.52 39.0 3.83e-01 100.0% 73.6%
3314585 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.52 38.0 2.90e-01 76.5% 38.7%
5078522 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.51 41.0 4.08e-01 86.3% 98.1%
3412171 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.51 40.0 2.52e-01 83.3% 97.1%
5015089 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 3.11e-01 87.3% 49.4%
3164932 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.50 40.0 3.73e-01 98.0% 68.0%
3908602 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.50 42.0 2.90e-01 91.2% 52.3%