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S2_003_000_R3_scaffold_4_prodigal-single.1__X__X__00122

Bact-Vir

S2_003_000_R3_scaffold_4_prodigal-single.1__X__X__00122

Identity

Kingdom:
phage

Quality

68.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 129-184
PDB
Domain cluster: rep: subassembly_31bins_VIRSorter_scaffold_0-circular-cat_2_SIZE_382860bp_prodigal-single.1__X__X__00192__D124-182
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.65 36.0 3.71e-01 76.8% 54.5%
3qokA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.63 36.0 3.00e-01 78.6% 32.0%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.62 35.0 3.51e-01 78.6% 52.6%
3li9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 50.0 4.05e-01 100.0% 90.3%
1qnaA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.59 43.0 3.66e-01 76.8% 75.3%
1x31C01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.59 42.0 3.53e-01 78.6% 62.9%
4jonC00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.58 40.0 3.05e-01 78.6% 33.9%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 46.0 4.17e-01 96.4% 65.8%
1p0zA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 42.0 3.29e-01 100.0% 37.4%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 41.0 4.11e-01 94.6% 89.7%
1z01A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 40.0 4.01e-01 94.6% 85.2%
3c7xA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.52 39.0 2.74e-01 83.9% 91.8%
4paaA03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.52 37.0 2.69e-01 100.0% 23.8%
1maeL00 2.60.30.10 Mainly Beta › Sandwich › Electron Transport Ethylamine Dehydrogenase › Methylamine/Aralkylamine dehydrogenase light chain 0.51 43.0 3.40e-01 100.0% 91.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3164979 3856.1.2.1 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.85 79.0 6.59e-01 100.0% 67.8%
2491347 3856.1.2.1 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.83 77.0 6.50e-01 100.0% 68.2%
3941952 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.82 72.0 3.99e-01 100.0% 8.3%
3251055 3856.1.2.1 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.80 74.0 6.81e-01 100.0% 85.7%
4369177 391.1.2.3 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.67 44.0 3.79e-01 94.6% 43.2%
3518993 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 37.0 4.34e-01 76.8% 85.7%
3271846 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.66 40.0 4.08e-01 96.4% 61.8%
3820673 377.1.1.47 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › C1-like_CT 0.65 51.0 4.98e-01 87.5% 80.0%
5028546 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 35.0 3.28e-01 76.8% 41.4%
3906671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 39.0 4.36e-01 82.1% 87.5%
3512723 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.63 53.0 3.63e-01 100.0% 96.4%
4028607 305.1.1.2 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.63 47.0 3.87e-01 83.9% 56.4%
3744691 63.1.1.1 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › CIMR 0.63 43.0 3.12e-01 71.4% 66.3%
3829228 377.1.1.47 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › C1-like_CT 0.60 44.0 4.21e-01 78.6% 67.7%
3826229 376.1.2.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT 0.59 44.0 4.52e-01 82.1% 83.6%
4668201 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.57 37.0 3.86e-01 91.1% 74.0%
3385646 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.56 46.0 3.69e-01 100.0% 44.2%
4963727 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 40.0 2.72e-01 80.4% 53.9%
5062674 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 40.0 3.24e-01 76.8% 43.3%
3998555 327.11.2.6 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_10 0.55 42.0 3.75e-01 92.9% 58.7%
3399989 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.52 43.0 3.29e-01 96.4% 75.7%
5053323 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.51 44.0 3.53e-01 100.0% 65.2%
5051933 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 43.0 2.99e-01 100.0% 30.0%
D2 medium residues 1-115
PDB