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S2_003_000_R3_scaffold_4_prodigal-single.1__X__X__00140
Bact-VirS2_003_000_R3_scaffold_4_prodigal-single.1__X__X__00140
Identity
- Kingdom:
- phage
Quality
71.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-97
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.70 | 61.0 | 4.94e-01 | 96.8% | 83.2% |
| 2o95B00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.69 | 60.0 | 4.88e-01 | 96.8% | 84.7% |
| 3ms6A00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.59 | 34.0 | 3.48e-01 | 100.0% | 57.8% |
| 3kzwA01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.55 | 46.0 | 3.93e-01 | 93.5% | 80.4% |
| 3tghA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.55 | 49.0 | 3.42e-01 | 100.0% | 87.6% |
| 5nthA01 | 3.40.50.10590 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Zn-dependent exopeptidases | 0.54 | 44.0 | 3.60e-01 | 93.5% | 76.0% |
| 5b55A01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 41.0 | 3.29e-01 | 81.7% | 78.4% |
| 4nqrA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 43.0 | 3.70e-01 | 93.5% | 94.8% |
| 2ezvA01 | 3.40.600.40 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Type II restriction enzyme SfiI, multifunctional domain | 0.51 | 43.0 | 3.45e-01 | 94.6% | 82.2% |
| 2a2jA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 37.0 | 2.95e-01 | 76.3% | 81.3% |
| 1x67A01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.51 | 42.0 | 3.74e-01 | 97.8% | 63.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3614175 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 34.0 | 3.22e-01 | 79.6% | 45.5% |
| 3503356 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.58 | 44.0 | 4.46e-01 | 93.5% | 78.9% |
| 4279262 | 10.12.1.25 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PhyH | 0.57 | 45.0 | 3.35e-01 | 87.1% | 67.7% |
| 3952411 | 1143.1.1.1 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.57 | 39.0 | 4.13e-01 | 71.0% | 83.7% |
| 3920679 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.56 | 50.0 | 3.47e-01 | 100.0% | 93.0% |
| 119490 | 57.1.1.2 ↗ | beta complex topology › Cloacin translocation domain › Cloacin translocation domain › Cloacin translocation domain › Pyocin_S | 0.55 | 42.0 | 3.62e-01 | 81.7% | 99.3% |
| 3329729 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.53 | 40.0 | 3.59e-01 | 82.8% | 93.1% |
| 3209732 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.53 | 38.0 | 3.32e-01 | 73.1% | 75.6% |
| 3264429 | 11.1.1.801 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7035 | 0.53 | 41.0 | 3.59e-01 | 97.8% | 55.7% |
| 3719951 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.52 | 38.0 | 3.47e-01 | 77.4% | 96.0% |
| 4459127 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.51 | 36.0 | 3.21e-01 | 73.1% | 74.1% |
| 3188848 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.51 | 40.0 | 2.90e-01 | 87.1% | 87.8% |
| 4944536 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 32.0 | 3.60e-01 | 98.9% | 89.2% |
D2
high
residues 228-246_487-552
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n3fA01 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.75 | 38.0 | 5.27e-01 | 90.6% | 100.0% |
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.71 | 41.0 | 4.98e-01 | 96.5% | 89.1% |
| 1yu0A01 | 2.10.10.30 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.62 | 34.0 | 4.20e-01 | 80.0% | 90.2% |
| 6p2uA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.58 | 29.0 | 3.57e-01 | 71.8% | 76.9% |
| 5z0uA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.57 | 34.0 | 3.41e-01 | 77.6% | 56.7% |
| 4okcA01 | 2.90.10.10 | Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain | 0.56 | 30.0 | 3.27e-01 | 80.0% | 62.3% |
| 4gc1A01 | 2.90.10.10 | Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain | 0.55 | 32.0 | 3.04e-01 | 87.1% | 46.2% |
| 2lojA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.53 | 27.0 | 3.43e-01 | 76.5% | 100.0% |
| 2azpA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.52 | 39.0 | 3.19e-01 | 81.2% | 78.9% |
| 4z32C02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 35.0 | 3.40e-01 | 83.5% | 62.6% |
| 1nr4C00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 32.0 | 3.59e-01 | 76.5% | 81.8% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3900165 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.71 | 37.0 | 4.96e-01 | 75.3% | 100.0% |
| 3528795 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.70 | 38.0 | 5.07e-01 | 96.5% | 100.0% |
| 3528870 | 391.1.2.13 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1-VW_OTOGL | 0.70 | 32.0 | 2.87e-01 | 70.6% | 30.8% |
| 3714061 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 29.0 | 3.57e-01 | 76.5% | 76.0% |
| 4958399 | 5.1.3.276 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FlgD_ig | 0.53 | 38.0 | 2.30e-01 | 74.1% | 55.6% |
| 4417898 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.53 | 37.0 | 3.08e-01 | 72.9% | 74.7% |
| 184803 | 6029.1.1.1 ↗ | beta meanders › Hemin uptake protein hemP › Hemin uptake protein hemP › Hemin uptake protein hemP › hemP | 0.52 | 28.0 | 3.11e-01 | 77.6% | 65.1% |
| 3845396 | 5.1.4.170 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EML_2 | 0.52 | 36.0 | 2.50e-01 | 70.6% | 83.3% |
| 5009920 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.52 | 38.0 | 2.59e-01 | 77.6% | 22.5% |
| 3892646 | 5.1.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin | 0.51 | 36.0 | 2.79e-01 | 75.3% | 40.0% |
| 4578847 | 702.1.1.3 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 | 0.50 | 37.0 | 2.48e-01 | 78.8% | 20.6% |
D3
high
residues 264-484
Domain cluster:
rep: IMGVR_UViG_3300031776_000022-3300031776-Ga0308415_10004864__D80-237
D4
high
residues 573-675
Domain cluster:
rep: SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00061__D46-171
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.58 | 42.0 | 4.42e-01 | 93.2% | 83.9% |
| 6tdyD01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.54 | 31.0 | 3.53e-01 | 96.1% | 76.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4024275 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.51 | 37.0 | 3.55e-01 | 73.8% | 90.4% |
| 3398867 | 621.1.1.2 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9 | 0.51 | 44.0 | 3.43e-01 | 100.0% | 84.2% |
| 4605381 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.51 | 37.0 | 4.02e-01 | 75.7% | 98.8% |
| 3703910 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.51 | 37.0 | 3.47e-01 | 75.7% | 83.2% |
| 4027536 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.51 | 37.0 | 3.85e-01 | 75.7% | 89.5% |
| 3583126 | 11.1.1.923 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Smg8_Smg9 | 0.51 | 43.0 | 3.26e-01 | 94.2% | 81.1% |
| 3838132 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.51 | 37.0 | 4.01e-01 | 75.7% | 97.6% |
| 4544432 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.50 | 38.0 | 3.58e-01 | 79.6% | 86.4% |
| 4178132 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.50 | 36.0 | 3.98e-01 | 75.7% | 98.8% |