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S2_003_000_R3_scaffold_4_prodigal-single.1__X__X__00189
Bact-VirS2_003_000_R3_scaffold_4_prodigal-single.1__X__X__00189
Identity
- Kingdom:
- phage
Quality
75.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-45
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4emtA02 | 3.40.50.12100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein | 0.76 | 52.0 | 3.62e-01 | 75.6% | 22.4% |
| 1z4vA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.67 | 54.0 | 3.13e-01 | 100.0% | 97.7% |
| 2iv2X01 | 2.20.25.90 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains | 0.67 | 42.0 | 3.84e-01 | 75.6% | 49.1% |
| 2e4mC00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.64 | 52.0 | 3.73e-01 | 100.0% | 32.2% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.64 | 51.0 | 4.17e-01 | 100.0% | 50.6% |
| 6yllA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 46.0 | 3.92e-01 | 100.0% | 98.8% |
| 2y1sA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.59 | 42.0 | 3.31e-01 | 85.4% | 73.1% |
| 4d8pB01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.58 | 41.0 | 3.23e-01 | 80.5% | 37.3% |
| 5cemA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 46.0 | 3.98e-01 | 100.0% | 89.0% |
| 7wa9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 46.0 | 3.29e-01 | 100.0% | 32.6% |
| 4kcaA03 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 37.0 | 3.01e-01 | 95.1% | 30.9% |
| 5ajqA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 45.0 | 3.64e-01 | 100.0% | 83.7% |
| 4d9uA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 43.0 | 3.59e-01 | 100.0% | 81.8% |
| 2nwvA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.53 | 37.0 | 2.99e-01 | 85.4% | 58.9% |
| 4u13A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 43.0 | 3.39e-01 | 100.0% | 44.0% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 41.0 | 2.90e-01 | 100.0% | 24.5% |
| 3nynB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 44.0 | 2.77e-01 | 100.0% | 30.6% |
| 3dlsB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 40.0 | 3.33e-01 | 100.0% | 77.6% |
| 2acxA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 44.0 | 3.52e-01 | 100.0% | 85.7% |
| 4xr7E01 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 43.0 | 2.66e-01 | 100.0% | 45.8% |
| 1x8bA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 41.0 | 3.51e-01 | 100.0% | 86.9% |
| 4fr4D01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 44.0 | 3.17e-01 | 100.0% | 60.5% |
| 2fm8B00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 39.0 | 3.06e-01 | 100.0% | 56.8% |
| 1yloE02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.52 | 36.0 | 3.03e-01 | 78.0% | 42.9% |
| 2x7fC01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 41.0 | 3.32e-01 | 100.0% | 86.2% |
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 35.0 | 2.81e-01 | 75.6% | 56.2% |
| 3zugB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.50 | 37.0 | 2.69e-01 | 87.8% | 38.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4279385 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.69 | 54.0 | 4.14e-01 | 100.0% | 36.2% |
| 3581854 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.64 | 49.0 | 3.88e-01 | 100.0% | 40.0% |
| 3507047 | 244.4.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit | 0.64 | 46.0 | 3.60e-01 | 78.0% | 34.0% |
| 5013051 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 51.0 | 3.68e-01 | 100.0% | 30.0% |
| 3606615 | 241.10.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain | 0.62 | 52.0 | 4.13e-01 | 100.0% | 44.4% |
| 4584323 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.62 | 45.0 | 4.07e-01 | 80.5% | 65.0% |
| 4175039 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.61 | 44.0 | 4.07e-01 | 80.5% | 70.9% |
| 3794066 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.61 | 43.0 | 3.83e-01 | 82.9% | 51.7% |
| 3963678 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 48.0 | 4.22e-01 | 100.0% | 58.5% |
| 4928393 | 5.1.3.22 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH | 0.61 | 47.0 | 2.89e-01 | 90.2% | 61.5% |
| 4645958 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.61 | 44.0 | 3.96e-01 | 80.5% | 65.0% |
| None | — | 0.61 | 49.0 | 3.43e-01 | 95.1% | 36.7% | |
| 4369577 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.60 | 44.0 | 3.94e-01 | 80.5% | 65.0% |
| 3894646 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.59 | 48.0 | 3.01e-01 | 100.0% | 25.0% |
| 3469996 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.58 | 48.0 | 2.91e-01 | 100.0% | 23.5% |
| 3804385 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 47.0 | 4.33e-01 | 100.0% | 80.0% |
| 4117250 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.58 | 41.0 | 3.80e-01 | 78.0% | 69.1% |
| 3704272 | 2004.1.1.175 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA | 0.57 | 44.0 | 2.65e-01 | 90.2% | 71.3% |
| 4505972 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.57 | 39.0 | 2.42e-01 | 78.0% | 10.3% |
| 5082974 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.56 | 37.0 | 3.60e-01 | 90.2% | 57.8% |
| 4927955 | 244.3.1.1 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N | 0.55 | 39.0 | 2.75e-01 | 75.6% | 64.4% |
| 4024366 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.55 | 45.0 | 2.79e-01 | 100.0% | 23.7% |
| 3589518 | 244.3.1.1 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N | 0.54 | 37.0 | 2.59e-01 | 75.6% | 20.0% |
| 3504458 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.54 | 44.0 | 2.71e-01 | 100.0% | 25.5% |
| 3574976 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.53 | 38.0 | 3.61e-01 | 82.9% | 76.4% |
| 4143086 | 244.3.1.1 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N | 0.53 | 37.0 | 2.68e-01 | 78.0% | 22.1% |
| 3258445 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.53 | 41.0 | 4.08e-01 | 100.0% | 84.4% |
| 3791839 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.53 | 38.0 | 3.26e-01 | 82.9% | 53.8% |
| 4951742 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.53 | 43.0 | 3.86e-01 | 100.0% | 81.5% |
| 5003966 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.52 | 39.0 | 3.63e-01 | 97.6% | 67.7% |
| 4978676 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.52 | 40.0 | 3.41e-01 | 95.1% | 58.7% |
| 3958242 | 885.1.1.0 ↗ | a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain | 0.52 | 40.0 | 3.28e-01 | 97.6% | 51.0% |
| 3266526 | 234.3.1.0 ↗ | a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain | 0.51 | 41.0 | 2.90e-01 | 95.1% | 42.4% |
| 4086202 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.51 | 33.0 | 3.00e-01 | 75.6% | 41.5% |
| 4947407 | 244.3.1.1 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N | 0.51 | 37.0 | 2.73e-01 | 78.0% | 72.5% |
| 4944756 | 3604.1.1.0 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain | 0.51 | 41.0 | 3.78e-01 | 100.0% | 88.3% |