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S2_003_000_R3_scaffold_4_prodigal-single.1__X__X__00195

Bact-Vir

S2_003_000_R3_scaffold_4_prodigal-single.1__X__X__00195

Identity

Kingdom:
phage

Quality

76.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-108
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02229.23 best PC4 40.6 2.10e-10 75.7% 76.9%
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.85 72.0 6.91e-01 100.0% 80.0%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.85 56.0 4.55e-01 71.4% 39.2%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.79 63.0 6.68e-01 100.0% 96.8%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.75 65.0 5.86e-01 98.6% 70.4%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.73 66.0 3.97e-01 100.0% 28.3%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 48.0 4.74e-01 72.9% 63.2%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 54.0 4.23e-01 78.6% 42.3%
2rkcA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.71 63.0 3.89e-01 98.6% 48.9%
5o46A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 50.0 4.28e-01 74.3% 64.0%
3fljA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 46.0 3.64e-01 70.0% 32.6%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 50.0 4.03e-01 75.7% 39.3%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.70 46.0 3.53e-01 70.0% 29.1%
2ebmA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.69 47.0 3.79e-01 70.0% 43.8%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.67 47.0 3.94e-01 74.3% 43.9%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.66 59.0 3.73e-01 100.0% 48.8%
1e50B00 2.40.250.10 Mainly Beta › Beta Barrel › Polyomavirus Enhancer Binding Protein 2; Chain: A; › Core binding factor, beta subunit 0.66 47.0 3.88e-01 77.1% 46.2%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.65 50.0 3.94e-01 85.7% 40.3%
1uypA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 56.0 3.74e-01 98.6% 56.5%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.63 49.0 3.80e-01 85.7% 38.4%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 43.0 3.39e-01 70.0% 34.8%
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.63 45.0 3.42e-01 74.3% 66.9%
3qz4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 55.0 3.61e-01 100.0% 52.6%
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.61 52.0 3.32e-01 100.0% 57.9%
4ao8A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 44.0 3.08e-01 77.1% 34.2%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.61 49.0 3.73e-01 91.4% 37.9%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 39.0 3.09e-01 71.4% 33.3%
3lydA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.60 50.0 3.94e-01 91.4% 47.2%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 49.0 3.14e-01 98.6% 44.5%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 41.0 3.47e-01 72.9% 43.9%
1kyfA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.59 40.0 3.44e-01 70.0% 85.0%
5egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 45.0 3.43e-01 82.9% 66.5%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.59 43.0 3.90e-01 78.6% 70.7%
1eq6A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.59 45.0 3.40e-01 85.7% 39.2%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 45.0 3.38e-01 82.9% 72.7%
1g0sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 43.0 3.19e-01 81.4% 61.2%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.57 47.0 4.10e-01 91.4% 84.4%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.57 37.0 3.74e-01 77.1% 66.2%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.57 47.0 3.11e-01 100.0% 50.8%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 48.0 3.81e-01 95.7% 73.6%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 39.0 3.32e-01 78.6% 44.3%
1m2xA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 44.0 3.10e-01 85.7% 91.3%
3volA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 44.0 3.53e-01 85.7% 46.4%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.23e-01 75.7% 80.2%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 39.0 3.43e-01 75.7% 84.4%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.55 43.0 3.73e-01 91.4% 53.0%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 44.0 3.51e-01 92.9% 73.9%
4lb8A02 2.60.40.3900 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.44e-01 85.7% 54.7%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.54 46.0 3.82e-01 98.6% 92.6%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 42.0 3.64e-01 87.1% 63.2%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.53 42.0 3.53e-01 94.3% 93.5%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 40.0 2.72e-01 88.6% 46.1%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.51 34.0 3.67e-01 78.6% 80.0%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.51 41.0 3.42e-01 91.4% 78.4%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 44.0 3.40e-01 100.0% 81.1%
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 42.0 2.85e-01 100.0% 89.4%
1pzdA01 2.60.40.1480 Mainly Beta › Sandwich › Immunoglobulin-like › Coatomer, gamma subunit, appendage domain 0.50 38.0 3.07e-01 85.7% 58.3%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4978676 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.94 89.0 8.43e-01 100.0% 86.3%
1810786 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.85 74.0 7.30e-01 95.7% 89.2%
3492201 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.84 73.0 7.13e-01 100.0% 88.0%
3198094 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.84 71.0 6.78e-01 100.0% 80.0%
4949068 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.79 52.0 4.46e-01 72.9% 43.6%
5009761 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.71 48.0 3.77e-01 70.0% 38.6%
3743855 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.69 59.0 3.76e-01 97.1% 33.2%
4972389 11.1.1.1403 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1616 0.68 48.0 3.92e-01 72.9% 75.2%
4086554 11.10.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › Sina_TRAF 0.67 53.0 4.32e-01 87.1% 73.3%
5029914 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.66 43.0 4.66e-01 84.3% 83.6%
3573723 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.65 53.0 3.16e-01 88.6% 18.3%
4028363 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.65 44.0 4.10e-01 75.7% 55.6%
3390634 243.1.1.41 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Coa1 0.65 48.0 4.36e-01 80.0% 58.9%
3878529 243.1.1.41 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Coa1 0.64 45.0 3.91e-01 74.3% 50.0%
3645476 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.64 53.0 4.73e-01 91.4% 71.0%
3493824 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 55.0 3.53e-01 98.6% 38.0%
3276021 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.63 54.0 3.23e-01 94.3% 43.7%
3962603 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.63 53.0 4.55e-01 91.4% 60.0%
1491977 881.1.1.6 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN 0.62 53.0 3.87e-01 91.4% 37.3%
3291496 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.62 49.0 3.36e-01 85.7% 40.6%
3836347 243.3.1.26 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › protein_MS5 0.62 43.0 3.57e-01 72.9% 46.4%
4942259 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.60 49.0 3.99e-01 90.0% 95.6%
3583426 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.60 49.0 3.94e-01 91.4% 50.0%
3721174 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.60 49.0 3.87e-01 88.6% 93.6%
3381759 5.3.1.2 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.59 51.0 4.08e-01 100.0% 62.0%
2516709 881.1.1.6 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN 0.59 47.0 3.50e-01 85.7% 36.4%
3214839 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.57 46.0 3.63e-01 91.4% 76.9%
4583096 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.56 44.0 3.08e-01 85.7% 85.8%
3663192 868.1.1.11 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › DUF7903 0.56 46.0 3.36e-01 92.9% 86.3%
3863194 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 44.0 3.63e-01 90.0% 47.7%
3620578 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 44.0 3.49e-01 91.4% 42.4%
3230598 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 44.0 3.54e-01 91.4% 76.0%
5044346 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 42.0 3.67e-01 84.3% 60.0%
3931229 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 39.0 2.52e-01 80.0% 13.9%
4345467 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.54 38.0 2.36e-01 75.7% 22.6%
5019252 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.54 38.0 2.32e-01 75.7% 20.2%
3377087 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 44.0 2.90e-01 98.6% 51.4%
3701914 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 42.0 3.91e-01 91.4% 95.8%
3265334 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.54 36.0 3.19e-01 74.3% 44.5%
4928465 296.1.1.1 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › NIR_SIR 0.54 48.0 3.89e-01 100.0% 56.0%
4524129 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.53 41.0 3.77e-01 85.7% 71.6%
4379531 223.1.1.41 a+b three layers › Profilin-like › sensor domains › sensor domains › HisK_sensor 0.53 39.0 2.94e-01 80.0% 68.2%
3871082 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.53 43.0 3.42e-01 92.9% 90.7%
3897847 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.52 44.0 3.38e-01 95.7% 76.9%
3725129 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.51 46.0 3.53e-01 100.0% 62.6%
3284948 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 38.0 3.60e-01 80.0% 65.9%
3188394 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.50 45.0 3.77e-01 100.0% 75.8%
4320633 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.50 34.0 2.16e-01 71.4% 21.5%