←Back to structures

S2_003_000_R3_scaffold_4_prodigal-single.1__X__X__00216

Bact-Vir

S2_003_000_R3_scaffold_4_prodigal-single.1__X__X__00216

Identity

Kingdom:
phage

Quality

86.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-83
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 53.0 5.75e-01 78.9% 100.0%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 48.0 5.13e-01 77.6% 82.8%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 50.0 5.42e-01 75.0% 100.0%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 51.0 5.65e-01 76.3% 98.3%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 42.0 4.48e-01 80.3% 69.7%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 51.0 5.19e-01 78.9% 79.7%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 51.0 4.63e-01 78.9% 67.3%
1mv3A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 50.0 5.06e-01 76.3% 97.3%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 48.0 5.10e-01 75.0% 94.0%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 48.0 5.13e-01 75.0% 92.2%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 48.0 4.79e-01 76.3% 75.6%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.66 48.0 4.63e-01 77.6% 87.2%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 47.0 5.04e-01 76.3% 93.9%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 45.0 5.13e-01 73.7% 100.0%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 47.0 5.25e-01 78.9% 100.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.53e-01 78.9% 71.4%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.65 38.0 4.55e-01 77.6% 91.7%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 47.0 4.86e-01 76.3% 84.3%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 47.0 4.73e-01 76.3% 80.0%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 44.0 4.98e-01 73.7% 100.0%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 48.0 4.12e-01 78.9% 51.3%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 47.0 5.09e-01 77.6% 92.2%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 46.0 4.90e-01 76.3% 87.7%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 46.0 5.11e-01 76.3% 100.0%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 47.0 5.15e-01 78.9% 96.7%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 47.0 5.14e-01 78.9% 96.8%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 45.0 4.80e-01 75.0% 94.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 47.0 5.09e-01 78.9% 98.4%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 49.0 5.17e-01 84.2% 95.5%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 46.0 4.38e-01 78.9% 65.6%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 44.0 4.92e-01 75.0% 98.2%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 45.0 4.77e-01 76.3% 91.0%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 48.0 4.89e-01 81.6% 89.2%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.63 45.0 4.85e-01 77.6% 96.8%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 46.0 5.05e-01 78.9% 100.0%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 48.0 4.65e-01 82.9% 77.4%
2dlpA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 47.0 4.57e-01 84.2% 75.3%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 43.0 4.69e-01 75.0% 94.9%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 35.0 4.35e-01 92.1% 97.7%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.61 42.0 3.18e-01 75.0% 28.5%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 44.0 4.76e-01 78.9% 100.0%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 46.0 4.73e-01 81.6% 90.0%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 45.0 4.47e-01 85.5% 77.2%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 52.0 4.92e-01 100.0% 82.6%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 36.0 4.12e-01 77.6% 95.7%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 37.0 4.08e-01 72.4% 81.4%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 41.0 4.25e-01 75.0% 88.6%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 43.0 4.46e-01 80.3% 95.6%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 4.18e-01 78.9% 87.1%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 40.0 4.45e-01 77.6% 98.3%
2k3yA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 3.59e-01 76.3% 79.1%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 37.0 3.86e-01 85.5% 76.5%
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.20e-01 100.0% 96.6%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.54 41.0 3.46e-01 80.3% 58.3%
ECOD (90)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4185893 4.1.1.394 ↗ beta barrels › SH3 › SH3 › SH3 › SlpA 0.72 50.0 5.33e-01 72.4% 100.0%
3389584 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 52.0 5.08e-01 78.9% 72.9%
3390253 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 60.0 6.05e-01 94.7% 98.7%
3475807 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 50.0 4.94e-01 75.0% 88.7%
4966131 4.1.3.1 ↗ beta barrels › SH3 › SH3 › Calcium-binding protein CcbP › Calci_bind_CcbP 0.70 51.0 4.52e-01 77.6% 54.5%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.69 50.0 5.17e-01 76.3% 100.0%
157818 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 53.0 4.99e-01 82.9% 71.4%
3888226 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 50.0 5.08e-01 77.6% 81.3%
3883661 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 58.0 5.12e-01 93.4% 66.4%
3523918 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.68 47.0 4.98e-01 76.3% 83.1%
3785385 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 50.0 4.81e-01 96.1% 67.8%
4367301 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 45.0 5.01e-01 77.6% 94.5%
3898952 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 49.0 4.96e-01 77.6% 80.0%
3797477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 48.0 5.10e-01 75.0% 95.4%
509 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 49.0 4.76e-01 77.6% 86.7%
3915732 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 48.0 4.67e-01 76.3% 69.4%
3480204 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 48.0 5.14e-01 76.3% 93.8%
3172122 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 47.0 5.23e-01 73.7% 100.0%
4091379 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 48.0 5.04e-01 78.9% 84.3%
4170983 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 48.0 4.86e-01 76.3% 81.3%
3482677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 49.0 5.11e-01 78.9% 90.0%
3840076 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.66 45.0 5.00e-01 71.1% 100.0%
4960540 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 48.0 5.14e-01 77.6% 92.3%
4001172 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 48.0 5.02e-01 77.6% 87.1%
3702915 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 48.0 5.24e-01 76.3% 96.7%
3415045 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 52.0 5.44e-01 88.2% 98.6%
3706000 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 49.0 4.94e-01 78.9% 93.3%
3924338 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 47.0 4.95e-01 76.3% 82.9%
3529708 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 47.0 4.78e-01 76.3% 78.7%
3522694 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 48.0 4.45e-01 77.6% 68.4%
3591824 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 50.0 5.20e-01 82.9% 94.3%
3554293 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 49.0 5.21e-01 80.3% 95.4%
3207081 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 45.0 4.82e-01 72.4% 95.4%
3025579 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 46.0 5.00e-01 75.0% 100.0%
3907870 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 47.0 4.67e-01 76.3% 73.4%
3537941 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 48.0 4.68e-01 78.9% 75.3%
2849853 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 48.0 5.12e-01 80.3% 94.0%
162525 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 49.0 4.42e-01 80.3% 59.8%
3573262 4.1.1.91 ↗ beta barrels › SH3 › SH3 › SH3 › hSH3 0.65 48.0 4.56e-01 78.9% 66.7%
4241924 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.65 46.0 4.36e-01 84.2% 63.3%
3782325 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 48.0 5.18e-01 78.9% 95.2%
3741878 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 47.0 5.05e-01 78.9% 95.4%
3554995 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 49.0 5.06e-01 81.6% 88.6%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 47.0 5.14e-01 77.6% 98.3%
3766868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 47.0 4.45e-01 77.6% 68.9%
4680114 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 47.0 4.77e-01 78.9% 81.3%
4505316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 43.0 4.66e-01 80.3% 88.3%
3897512 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 47.0 4.69e-01 78.9% 100.0%
3636812 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 48.0 5.16e-01 81.6% 95.4%
3939132 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 47.0 4.32e-01 78.9% 72.0%
3899828 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 53.0 5.28e-01 96.1% 91.3%
3498145 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 47.0 5.05e-01 78.9% 93.8%
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 48.0 4.50e-01 96.1% 66.3%
3778581 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 48.0 4.92e-01 82.9% 84.0%
3370389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.84e-01 77.6% 92.3%
4542692 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.43e-01 77.6% 74.1%
3494765 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.62 46.0 3.29e-01 77.6% 26.8%
3396897 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 45.0 4.87e-01 77.6% 95.2%
4291404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.50e-01 75.0% 89.3%
3514043 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 47.0 4.76e-01 81.6% 84.0%
2890675 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 45.0 4.87e-01 78.9% 92.2%
3482683 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.97e-01 78.9% 98.3%
3243188 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 45.0 4.58e-01 78.9% 88.0%
3475510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.65e-01 86.8% 97.8%
4669027 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 45.0 3.21e-01 80.3% 26.7%
3907176 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.61 44.0 4.25e-01 78.9% 75.6%
3214234 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 4.80e-01 77.6% 100.0%
3521904 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.50e-01 88.2% 83.2%
5043533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.62e-01 78.9% 92.2%
3995092 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.60 51.0 3.88e-01 100.0% 57.5%
4405469 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.59 46.0 4.33e-01 88.2% 69.5%
3581336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.41e-01 96.1% 80.0%
3794445 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 49.0 4.90e-01 100.0% 97.5%
3389432 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 48.0 4.92e-01 100.0% 96.0%
3243710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 41.0 4.23e-01 73.7% 94.3%
3958145 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 41.0 4.43e-01 73.7% 92.3%
3521739 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 50.0 4.89e-01 98.7% 90.6%
3541996 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.58 42.0 3.25e-01 84.2% 32.1%
3464620 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 40.0 4.32e-01 75.0% 92.3%
3698582 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 46.0 4.75e-01 90.8% 97.1%
3372822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 44.0 4.45e-01 86.8% 88.0%
5044879 3268.1.1.0 ↗ a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase 0.56 42.0 4.06e-01 78.9% 97.6%
4012002 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 41.0 4.25e-01 80.3% 90.0%
3810562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 40.0 4.11e-01 77.6% 81.3%
3189264 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.56 46.0 4.26e-01 92.1% 76.0%
3490245 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.29e-01 89.5% 84.4%
4014972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.42e-01 92.1% 84.4%
3702154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 39.0 4.01e-01 86.8% 77.3%
3514867 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 41.0 4.17e-01 90.8% 85.3%
3422852 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.53 44.0 3.79e-01 93.4% 90.4%