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S2_005_002_R2_scaffold_27_prodigal-single.1__X__X__00164
Bact-VirS2_005_002_R2_scaffold_27_prodigal-single.1__X__X__00164
Identity
- Kingdom:
- phage
Quality
70.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-146
Domain cluster:
rep: OQ790161.1__WJJ55101.1__X__00224__D8-146
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25613.2 best | DUF7941 | 82.5 | 5.10e-23 | 100.0% | 52.5% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fb9B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 26.0 | 3.34e-01 | 90.1% | 65.5% |
| 4dkkA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 24.0 | 3.32e-01 | 90.8% | 75.7% |
| 2z4hA01 | 2.40.128.300 | Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain | 0.51 | 27.0 | 3.44e-01 | 78.7% | 89.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4930846 | 2.1.1.12 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e | 0.58 | 23.0 | 3.40e-01 | 78.0% | 83.3% |
| 3289386 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 28.0 | 3.44e-01 | 86.5% | 72.7% |
| 4029209 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.53 | 26.0 | 3.48e-01 | 90.8% | 91.4% |
| 3980078 | 274.1.1.24 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSppdC | 0.52 | 26.0 | 3.42e-01 | 75.9% | 92.9% |
D2
medium
residues 185-265
D3
medium
residues 273-378
D4
medium
residues 392-492
D5
medium
residues 511-588
D6
medium
residues 664-789
Domain cluster:
rep: JGI24723J26617_10000007_prodigal-single.1__X__X__00471__D119-228
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03382.21 best | DUF285 | 76.6 | 1.90e-21 | 73.0% | 75.8% |
| PF03382.21 | DUF285 | 74.9 | 6.40e-21 | 60.3% | 62.5% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4h09D00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.80 | 72.0 | 5.03e-01 | 100.0% | 32.4% |
| 4gt6A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.78 | 73.0 | 5.07e-01 | 100.0% | 34.8% |
| 4fs7A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.76 | 70.0 | 4.90e-01 | 100.0% | 36.3% |
| 4r6gA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.75 | 68.0 | 4.57e-01 | 100.0% | 26.9% |
| 4v2dA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.74 | 67.0 | 4.92e-01 | 100.0% | 38.1% |
| 1oznA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.74 | 68.0 | 5.20e-01 | 100.0% | 45.1% |
| 2xwtC00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.74 | 68.0 | 5.49e-01 | 100.0% | 56.4% |
| 4hq1A01 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.73 | 66.0 | 4.93e-01 | 97.6% | 50.0% |
| 4b8cJ01 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.72 | 63.0 | 5.34e-01 | 92.9% | 61.3% |
| 2j8iA01 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.70 | 52.0 | 5.68e-01 | 88.9% | 95.1% |
| 2id5A01 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.70 | 64.0 | 4.55e-01 | 100.0% | 34.2% |
| 1w8aA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.69 | 63.0 | 5.52e-01 | 100.0% | 68.8% |
| 2xotB01 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.69 | 63.0 | 5.02e-01 | 100.0% | 52.2% |
| 4q62A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.65 | 59.0 | 4.15e-01 | 100.0% | 34.3% |
| 2ifgA01 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.64 | 58.0 | 5.40e-01 | 100.0% | 87.2% |
| 1a9nC00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.63 | 57.0 | 5.14e-01 | 100.0% | 79.3% |
| 3nb2A01 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.63 | 57.0 | 5.12e-01 | 100.0% | 78.5% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3309702 | 207.1.1.43 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 | 0.84 | 71.0 | 4.56e-01 | 100.0% | 20.9% |
| 3804197 | 207.1.1.238 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3, LRR_13 | 0.82 | 73.0 | 4.74e-01 | 100.0% | 23.2% |
| None | — | 0.82 | 76.0 | 6.21e-01 | 100.0% | 57.7% | |
| 3653283 | 207.1.1.95 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 | 0.82 | 73.0 | 5.43e-01 | 100.0% | 40.7% |
| 3358714 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.81 | 72.0 | 4.85e-01 | 100.0% | 27.8% |
| 3830295 | 207.1.1.43 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 | 0.80 | 71.0 | 4.87e-01 | 100.0% | 29.9% |
| 3363049 | 207.1.1.55 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 | 0.80 | 73.0 | 6.22e-01 | 100.0% | 64.2% |
| 4450783 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.79 | 70.0 | 5.80e-01 | 100.0% | 55.8% |
| 3820965 | 207.1.1.43 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 | 0.79 | 72.0 | 4.76e-01 | 100.0% | 26.1% |
| 3357776 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.78 | 72.0 | 4.64e-01 | 100.0% | 31.2% |
| 3443668 | 207.1.1.95 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 | 0.77 | 72.0 | 5.33e-01 | 100.0% | 42.4% |
| 3831310 | 207.1.1.174 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_3 | 0.77 | 68.0 | 4.26e-01 | 100.0% | 18.3% |
| 3666922 | 207.1.1.95 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 | 0.77 | 69.0 | 5.57e-01 | 100.0% | 53.3% |
| 3310730 | 207.1.1.55 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 | 0.77 | 68.0 | 5.40e-01 | 100.0% | 49.0% |
| 3403760 | 207.1.1.141 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5, LRR_8 | 0.77 | 68.0 | 4.31e-01 | 100.0% | 20.9% |
| 4377081 | 207.1.1.137 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8 | 0.76 | 67.0 | 5.38e-01 | 100.0% | 50.6% |
| 3818707 | 207.1.1.55 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 | 0.76 | 68.0 | 5.52e-01 | 100.0% | 53.8% |
| 3815359 | 207.1.1.238 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3, LRR_13 | 0.76 | 69.0 | 4.92e-01 | 100.0% | 35.7% |
| 3454800 | 207.1.1.95 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 | 0.75 | 65.0 | 5.73e-01 | 100.0% | 65.0% |
| 3302463 | 207.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 | 0.75 | 67.0 | 4.46e-01 | 100.0% | 26.2% |
| 4588994 | 207.1.1.132 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_6, LRR_8 | 0.74 | 66.0 | 6.35e-01 | 100.0% | 86.4% |
| 3578701 | 207.1.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_4 | 0.73 | 63.0 | 4.57e-01 | 100.0% | 34.7% |
| 3467917 | 207.1.1.102 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 | 0.73 | 66.0 | 4.82e-01 | 100.0% | 37.2% |
| None | — | 0.70 | 63.0 | 4.49e-01 | 97.6% | 34.5% | |
| 4827887 | 207.1.1.95 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 | 0.70 | 60.0 | 5.85e-01 | 95.2% | 85.9% |
| 3447956 | 145.1.1.26 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › LRR_6, DUF7885 | 0.68 | 62.0 | 4.49e-01 | 100.0% | 38.3% |
| 3545294 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.63 | 58.0 | 5.03e-01 | 100.0% | 80.5% |
| 3967223 | 207.9.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide | 0.63 | 57.0 | 5.30e-01 | 100.0% | 79.9% |
| 3925337 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.63 | 52.0 | 4.67e-01 | 88.9% | 71.4% |
| 3327690 | 207.9.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide | 0.62 | 56.0 | 5.19e-01 | 100.0% | 82.5% |
D7
medium
residues 790-871
Domain cluster:
rep: PHAGE-A7--js4906-24-3_S18_scaffold_0_curated_closed_complete_start-adj_prodigal-single.1__X__X__00180__D876-962
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03382.21 best | DUF285 | 77.1 | 1.30e-21 | 85.4% | 49.2% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b8cJ01 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.73 | 62.0 | 4.67e-01 | 100.0% | 38.7% |
| 7ax1A01 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.72 | 61.0 | 5.09e-01 | 100.0% | 54.2% |
| 2z63A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.68 | 60.0 | 3.60e-01 | 100.0% | 17.5% |
| 1yy9A03 | 3.80.20.20 | Alpha Beta › Alpha-Beta Horseshoe › 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A › Receptor L-domain | 0.64 | 55.0 | 4.43e-01 | 100.0% | 50.0% |
| 4nzrM02 | 2.160.20.180 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.59 | 51.0 | 4.00e-01 | 100.0% | 44.6% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3657644 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.69 | 62.0 | 5.20e-01 | 100.0% | 62.3% |
| 3576414 | 207.1.1.55 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 | 0.68 | 61.0 | 5.45e-01 | 100.0% | 87.0% |
| 3669667 | 207.1.1.95 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 | 0.68 | 60.0 | 4.65e-01 | 100.0% | 54.1% |
| None | — | 0.68 | 60.0 | 3.94e-01 | 100.0% | 28.2% | |
| 3622696 | 207.1.1.130 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_5, LRR_8 | 0.67 | 60.0 | 3.92e-01 | 100.0% | 29.0% |
| 3596393 | 207.1.1.132 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_6, LRR_8 | 0.67 | 59.0 | 3.96e-01 | 100.0% | 30.1% |
| 3789288 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.66 | 58.0 | 4.32e-01 | 100.0% | 47.9% |