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S2_005_003_R2_scaffold_22_prodigal-single.1__X__X__00034
Bact-VirS2_005_003_R2_scaffold_22_prodigal-single.1__X__X__00034
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 179-285
Domain cluster:
rep: OR496884.1__WNV45857.1__X__00081__D188-287
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r17C00 | 1.25.40.660 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein 35, helical subcomplex Vps35-C | 0.62 | 50.0 | 3.63e-01 | 86.0% | 38.3% |
| 1h2tC03 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 49.0 | 3.83e-01 | 87.9% | 39.7% |
| 3pmcA00 | 1.10.490.70 | Mainly Alpha › Orthogonal Bundle › Globin-like › Histidine kinase N-terminal domain | 0.57 | 40.0 | 3.84e-01 | 74.8% | 78.0% |
| 3ma5A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 40.0 | 4.30e-01 | 86.0% | 92.2% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 38.0 | 3.50e-01 | 72.0% | 67.8% |
| 6ljaA01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.55 | 48.0 | 3.40e-01 | 100.0% | 95.0% |
| 3lwjA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 40.0 | 3.37e-01 | 80.4% | 83.4% |
| 1hu3A00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 43.0 | 3.60e-01 | 90.7% | 64.7% |
| 3colB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 38.0 | 3.29e-01 | 73.8% | 59.2% |
| 2b3fC02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 37.0 | 3.12e-01 | 72.9% | 80.5% |
| 4hacB01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.53 | 47.0 | 3.97e-01 | 99.1% | 98.9% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.53 | 47.0 | 3.75e-01 | 98.1% | 94.3% |
| 3kuqA00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.52 | 40.0 | 3.44e-01 | 86.0% | 89.1% |
| 4uurA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 39.0 | 3.80e-01 | 82.2% | 89.5% |
| 4epzA00 | 1.25.40.810 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ | 0.51 | 40.0 | 3.62e-01 | 86.9% | 90.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3245018 | 109.4.1.543 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › efThoc1 | 0.63 | 50.0 | 4.06e-01 | 86.9% | 45.1% |
| 4988447 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.62 | 30.0 | 3.01e-01 | 100.0% | 41.7% |
| 4109540 | 3758.2.1.1 ↗ | alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB | 0.60 | 41.0 | 3.23e-01 | 71.0% | 62.5% |
| 3218544 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.58 | 41.0 | 4.66e-01 | 92.5% | 100.0% |
| 3244588 | 371.1.1.0 ↗ | few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 | 0.56 | 42.0 | 4.48e-01 | 91.6% | 92.2% |
| 3249419 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 42.0 | 3.07e-01 | 86.0% | 30.5% |
| 4872098 | 3758.2.1.2 ↗ | alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB | 0.53 | 44.0 | 3.45e-01 | 94.4% | 66.7% |
| 3531345 | 109.4.1.498 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4487 | 0.51 | 44.0 | 3.65e-01 | 97.2% | 96.9% |
D2
medium
residues 1-161
Domain cluster:
rep: OR413575.1__WNT47070.1__SPLA10_PHROGS00009__00009__D4-165
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.63 | 29.0 | 3.87e-01 | 80.1% | 79.3% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.58 | 43.0 | 3.88e-01 | 78.9% | 80.3% |
| 3lewA01 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 41.0 | 3.28e-01 | 77.6% | 78.3% |
| 1oqcA00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.52 | 28.0 | 3.34e-01 | 85.1% | 74.1% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3726537 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.52 | 46.0 | 3.04e-01 | 98.8% | 97.8% |
| 4974860 | 1075.5.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt | 0.52 | 36.0 | 3.42e-01 | 82.0% | 59.0% |