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S2_005_003_R2_scaffold_22_prodigal-single.1__X__X__00054
Bact-VirS2_005_003_R2_scaffold_22_prodigal-single.1__X__X__00054
Identity
- Kingdom:
- phage
Quality
55.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 79-152
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 53.0 | 4.90e-01 | 73.0% | 95.7% |
| 1ls1A01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.72 | 61.0 | 5.80e-01 | 94.6% | 93.3% |
| 2oocB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.68 | 57.0 | 5.13e-01 | 100.0% | 66.7% |
| 3rmiA00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.64 | 45.0 | 3.96e-01 | 71.6% | 61.9% |
| 2oceA01 | 1.10.10.650 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like | 0.62 | 42.0 | 3.70e-01 | 73.0% | 46.0% |
| 2bnxB01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.62 | 44.0 | 3.10e-01 | 74.3% | 54.2% |
| 5j1gA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 50.0 | 3.57e-01 | 89.2% | 74.1% |
| 2yhsA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.61 | 50.0 | 4.66e-01 | 93.2% | 76.3% |
| 1s35A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 43.0 | 3.84e-01 | 75.7% | 85.5% |
| 3ckcA01 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 52.0 | 3.66e-01 | 93.2% | 69.5% |
| 2hoqA02 | 1.10.150.520 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.60 | 43.0 | 4.22e-01 | 74.3% | 74.7% |
| 4f91B04 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.59 | 44.0 | 3.59e-01 | 79.7% | 85.9% |
| 2gbbB00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.59 | 49.0 | 3.91e-01 | 93.2% | 70.3% |
| 1x9fD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 42.0 | 3.50e-01 | 78.4% | 87.9% |
| 2wdqC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.57 | 42.0 | 3.63e-01 | 79.7% | 90.1% |
| 1x6iB00 | 1.10.150.250 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Flavinator of succinate dehydrogenase | 0.56 | 40.0 | 3.86e-01 | 77.0% | 64.4% |
| 3whjA00 | 6.10.140.1710 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 39.0 | 3.52e-01 | 74.3% | 76.6% |
| 3hn2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.56 | 49.0 | 4.11e-01 | 98.6% | 76.6% |
| 1j09A05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 46.0 | 4.21e-01 | 91.9% | 80.6% |
| 2cruA01 | 1.10.8.140 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain | 0.54 | 34.0 | 3.40e-01 | 95.9% | 59.7% |
| 1rp5A03 | 3.30.70.2110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 44.0 | 4.23e-01 | 98.6% | 77.8% |
| 1vw4T01 | 6.10.330.20 | Special › Helix non-globular › Monooxygenase › | 0.54 | 39.0 | 3.44e-01 | 77.0% | 69.6% |
| 8ciwB01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.53 | 39.0 | 3.50e-01 | 82.4% | 89.6% |
| 1y7oB00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.53 | 43.0 | 3.25e-01 | 87.8% | 50.6% |
| 5e0sB00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.53 | 42.0 | 3.09e-01 | 86.5% | 44.3% |
| 1eijA00 | 1.10.8.140 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain | 0.53 | 39.0 | 3.95e-01 | 81.1% | 84.7% |
| 1gqiA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 42.0 | 2.76e-01 | 86.5% | 34.4% |
| 3fd0A01 | 3.90.1150.60 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Methioning gamme-lyase, C-terminal domain | 0.51 | 43.0 | 3.29e-01 | 98.6% | 56.0% |
| 5c8qB02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.51 | 31.0 | 3.68e-01 | 87.8% | 97.8% |
| 3bf5A01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.50 | 41.0 | 2.96e-01 | 93.2% | 95.8% |
| 6o9aA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 37.0 | 2.98e-01 | 79.7% | 84.1% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3283790 | 150.7.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE | 0.76 | 52.0 | 4.44e-01 | 70.3% | 76.5% |
| 4211611 | 601.25.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical | 0.74 | 66.0 | 5.32e-01 | 100.0% | 72.4% |
| 4456254 | 601.25.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical | 0.73 | 65.0 | 5.06e-01 | 100.0% | 66.3% |
| 5043220 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.71 | 58.0 | 5.57e-01 | 89.2% | 92.9% |
| 4932398 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.70 | 60.0 | 5.75e-01 | 94.6% | 94.1% |
| 3498895 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.70 | 60.0 | 4.93e-01 | 100.0% | 81.4% |
| 3705785 | 3050.1.1.30 ↗ | alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › TMEM254 | 0.70 | 51.0 | 4.68e-01 | 77.0% | 62.1% |
| 3923539 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.69 | 52.0 | 4.14e-01 | 79.7% | 56.6% |
| 3716198 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.69 | 47.0 | 4.03e-01 | 71.6% | 65.8% |
| 4608200 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.68 | 48.0 | 4.07e-01 | 74.3% | 93.6% |
| 4996806 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.67 | 47.0 | 3.76e-01 | 74.3% | 57.4% |
| 4988252 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.67 | 58.0 | 5.10e-01 | 100.0% | 97.4% |
| 4130802 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.66 | 55.0 | 5.34e-01 | 94.6% | 98.8% |
| 3764093 | 6171.1.1.1 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › JHD | 0.66 | 46.0 | 4.27e-01 | 73.0% | 84.2% |
| 3933632 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.66 | 53.0 | 5.40e-01 | 100.0% | 97.1% |
| 3681932 | 185.1.1.2 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › LTP_2 | 0.62 | 43.0 | 3.84e-01 | 74.3% | 69.1% |
| 3964169 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.61 | 49.0 | 4.67e-01 | 89.2% | 74.4% |
| 3400398 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.61 | 47.0 | 3.16e-01 | 87.8% | 56.7% |
| 3394753 | 192.5.1.12 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › PH_19 | 0.60 | 42.0 | 4.38e-01 | 100.0% | 77.1% |
| 4954319 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.59 | 42.0 | 3.01e-01 | 75.7% | 28.3% |
| 4026529 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.59 | 45.0 | 3.00e-01 | 81.1% | 22.4% |
| 5014658 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.59 | 42.0 | 2.97e-01 | 78.4% | 72.7% |
| 4031396 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.58 | 46.0 | 4.20e-01 | 89.2% | 69.5% |
| 3717442 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.58 | 49.0 | 3.71e-01 | 100.0% | 51.8% |
| 4348094 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.56 | 46.0 | 4.41e-01 | 95.9% | 85.6% |
| 3643161 | 7579.1.1.44 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 | 0.55 | 46.0 | 3.00e-01 | 91.9% | 20.4% |
| 3850353 | 150.1.1.31 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Tweety | 0.55 | 39.0 | 3.09e-01 | 74.3% | 80.0% |
| 4802811 | 3833.1.1.0 ↗ | alpha complex topology › TcA alpha-helical shell domain › TcA alpha-helical shell domain › TcA alpha-helical shell domain | 0.54 | 37.0 | 3.67e-01 | 74.3% | 66.3% |
| 4306177 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.50 | 43.0 | 2.81e-01 | 100.0% | 28.3% |
D2
medium
residues 153-218_249-332_345-362
D3
medium
residues 363-453