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S2_005_003_R2_scaffold_22_prodigal-single.1__X__X__00212
Bact-VirS2_005_003_R2_scaffold_22_prodigal-single.1__X__X__00212
Identity
- Kingdom:
- phage
Quality
80.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-48
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.78 | 43.0 | 3.57e-01 | 95.2% | 31.9% |
| 5i41B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.64 | 56.0 | 4.80e-01 | 97.6% | 61.2% |
| 1in4A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 39.0 | 3.29e-01 | 83.3% | 32.9% |
| 1c0gA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.63 | 46.0 | 3.66e-01 | 97.6% | 37.0% |
| 2fji101 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.61 | 48.0 | 3.05e-01 | 92.9% | 17.2% |
| 7qjnA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.61 | 53.0 | 3.24e-01 | 100.0% | 24.5% |
| 2l2oA00 | 1.10.10.1540 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain | 0.60 | 42.0 | 3.46e-01 | 90.5% | 37.6% |
| 4bwxA03 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 41.0 | 3.32e-01 | 71.4% | 50.0% |
| 2zhgA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.59 | 49.0 | 3.66e-01 | 100.0% | 36.4% |
| 2drhB00 | 3.60.70.12 | Alpha Beta › 4-Layer Sandwich › L-amino peptidase D-ALA esterase/amidase › L-amino peptidase D-ALA esterase/amidase | 0.59 | 50.0 | 2.93e-01 | 97.6% | 70.5% |
| 3egiA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 46.0 | 3.04e-01 | 92.9% | 81.0% |
| 2napA03 | 3.40.228.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 | 0.57 | 49.0 | 3.05e-01 | 95.2% | 30.7% |
| 3gpvA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.57 | 48.0 | 3.63e-01 | 100.0% | 43.4% |
| 4uijA00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.57 | 45.0 | 3.40e-01 | 88.1% | 52.9% |
| 2jiiA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.57 | 50.0 | 3.21e-01 | 100.0% | 40.5% |
| 5b3hC01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.57 | 35.0 | 3.40e-01 | 100.0% | 52.1% |
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 44.0 | 3.93e-01 | 100.0% | 61.7% |
| 1ka1A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.56 | 49.0 | 3.10e-01 | 100.0% | 37.4% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 46.0 | 3.58e-01 | 95.2% | 66.3% |
| 1t3aA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.55 | 43.0 | 2.55e-01 | 95.2% | 44.0% |
| 1epwA01 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.55 | 47.0 | 2.69e-01 | 100.0% | 46.1% |
| 5xgbA03 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.54 | 45.0 | 2.83e-01 | 95.2% | 18.1% |
| 4qarA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.54 | 46.0 | 3.00e-01 | 100.0% | 64.1% |
| 3cdhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 44.0 | 3.16e-01 | 95.2% | 76.9% |
| 1c0wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 40.0 | 3.31e-01 | 81.0% | 71.2% |
| 2e1mA05 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.53 | 39.0 | 3.03e-01 | 95.2% | 36.3% |
| 3ho6B00 | 3.40.50.11050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain | 0.53 | 45.0 | 2.80e-01 | 97.6% | 39.8% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.52 | 44.0 | 3.66e-01 | 97.6% | 70.5% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.52 | 42.0 | 2.72e-01 | 100.0% | 23.9% |
| 2xfvA00 | 3.10.260.30 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › | 0.52 | 38.0 | 3.09e-01 | 92.9% | 58.3% |
| 6zhhA01 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.52 | 42.0 | 2.80e-01 | 92.9% | 22.2% |
| 4xr7F02 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 41.0 | 3.22e-01 | 90.5% | 78.9% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4030787 | 605.1.1.303 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Terminase_4 | 0.70 | 48.0 | 3.61e-01 | 71.4% | 30.0% |
| 4183916 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.69 | 58.0 | 3.71e-01 | 100.0% | 35.8% |
| 3183367 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.67 | 48.0 | 2.88e-01 | 95.2% | 11.9% |
| 3655694 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.66 | 51.0 | 3.99e-01 | 88.1% | 41.2% |
| 4520820 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.64 | 56.0 | 4.58e-01 | 97.6% | 54.7% |
| 3987788 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.63 | 49.0 | 3.22e-01 | 100.0% | 20.0% |
| 4090636 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.63 | 55.0 | 4.66e-01 | 100.0% | 60.0% |
| 4089558 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 50.0 | 3.38e-01 | 97.6% | 22.2% |
| 3496957 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.61 | 49.0 | 2.73e-01 | 100.0% | 6.5% |
| 4957076 | 101.1.9.134 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF2067 | 0.60 | 37.0 | 3.32e-01 | 100.0% | 36.7% |
| 3903618 | 219.1.1.54 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 | 0.60 | 54.0 | 3.22e-01 | 100.0% | 33.8% |
| 3415404 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.60 | 48.0 | 2.71e-01 | 100.0% | 18.6% |
| 4932995 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.59 | 44.0 | 4.27e-01 | 85.7% | 86.0% |
| 5024287 | 103.5.1.11 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DUF2067 | 0.59 | 51.0 | 4.26e-01 | 100.0% | 58.7% |
| 3612298 | 3279.1.1.0 ↗ | alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases | 0.59 | 43.0 | 2.87e-01 | 100.0% | 17.2% |
| 3284729 | 101.1.9.128 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR-DNA-bind, MerR_1 | 0.59 | 50.0 | 3.70e-01 | 97.6% | 38.2% |
| 4675076 | 192.19.1.1 ↗ | alpha bundles › Long alpha-hairpin › YnzC-like › YnzC-like › DUF896 | 0.58 | 44.0 | 3.66e-01 | 83.3% | 53.3% |
| 3717247 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.58 | 46.0 | 2.93e-01 | 95.2% | 16.8% |
| 3544534 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.58 | 48.0 | 3.91e-01 | 92.9% | 63.7% |
| 3282549 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.58 | 49.0 | 3.68e-01 | 100.0% | 68.7% |
| 3971074 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.58 | 48.0 | 3.09e-01 | 100.0% | 51.1% |
| 5010468 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.58 | 49.0 | 3.48e-01 | 100.0% | 35.2% |
| 3913514 | 109.4.1.846 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Stereocilin | 0.58 | 47.0 | 3.09e-01 | 100.0% | 58.6% |
| 5070666 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.57 | 45.0 | 4.20e-01 | 90.5% | 81.8% |
| 5048633 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.57 | 48.0 | 3.32e-01 | 100.0% | 33.8% |
| 1686019 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.57 | 48.0 | 3.10e-01 | 95.2% | 34.3% |
| 3804069 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.57 | 49.0 | 3.80e-01 | 100.0% | 66.3% |
| 3402781 | 3704.1.1.0 ↗ | alpha superhelices › Apoptotic protease-activating factor 1 (Apaf-1) helical domain › Apoptotic protease-activating factor 1 (Apaf-1) helical domain › Apoptotic protease-activating factor 1 (Apaf-1) helical domain | 0.56 | 46.0 | 3.04e-01 | 92.9% | 22.9% |
| 5047649 | 101.1.9.36 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR | 0.56 | 42.0 | 4.05e-01 | 85.7% | 86.0% |
| 4030496 | 5081.1.1.2 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1 | 0.56 | 46.0 | 3.12e-01 | 97.6% | 42.1% |
| 3411883 | 604.1.1.63 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 | 0.56 | 46.0 | 3.32e-01 | 90.5% | 85.0% |
| 3356095 | 601.37.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Photosystem II lipoprotein Psb27 › Photosystem II lipoprotein Psb27 › PSII_Pbs27 | 0.56 | 48.0 | 3.51e-01 | 100.0% | 67.5% |
| 3740499 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.56 | 48.0 | 3.06e-01 | 100.0% | 78.7% |
| 3717770 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.56 | 48.0 | 3.00e-01 | 97.6% | 75.7% |
| 4586962 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.55 | 44.0 | 3.35e-01 | 97.6% | 72.5% |
| 4822328 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.55 | 32.0 | 3.38e-01 | 88.1% | 59.0% |
| 3974773 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 45.0 | 3.53e-01 | 100.0% | 83.8% |
| 3181095 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.55 | 47.0 | 3.04e-01 | 100.0% | 20.0% |
| 3785380 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.55 | 44.0 | 2.61e-01 | 100.0% | 45.5% |
| 3611776 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.55 | 45.0 | 3.18e-01 | 95.2% | 54.3% |
| 3176868 | 129.1.1.102 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › PF30133 | 0.54 | 44.0 | 3.08e-01 | 100.0% | 27.5% |
| 3558124 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 46.0 | 4.36e-01 | 100.0% | 82.0% |
| 4057677 | 3001.1.1.1 ↗ | alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 | 0.54 | 40.0 | 3.30e-01 | 83.3% | 42.4% |
| 4297810 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.54 | 43.0 | 3.44e-01 | 92.9% | 70.0% |
| 3219796 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.54 | 45.0 | 2.73e-01 | 100.0% | 30.6% |
| 4195219 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.54 | 41.0 | 3.28e-01 | 90.5% | 40.0% |
| 4034096 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 44.0 | 3.57e-01 | 90.5% | 53.8% |
| 3622196 | 604.1.1.63 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 | 0.53 | 44.0 | 3.23e-01 | 95.2% | 61.7% |
| 3916642 | 192.2.1.56 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF9 | 0.53 | 46.0 | 3.09e-01 | 95.2% | 72.7% |
| 3862747 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.53 | 46.0 | 3.64e-01 | 97.6% | 50.6% |
| 4999722 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 45.0 | 3.51e-01 | 100.0% | 46.3% |
| 3811532 | 304.9.1.7 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › XS | 0.53 | 39.0 | 3.15e-01 | 100.0% | 38.9% |
| 4947701 | 101.1.2.882 ↗ | alpha arrays › HTH › HTH › winged helix domain › FeoA | 0.53 | 42.0 | 3.28e-01 | 92.9% | 67.0% |
| 3788382 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.52 | 42.0 | 3.49e-01 | 92.9% | 77.5% |
| 3409846 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.52 | 43.0 | 2.55e-01 | 100.0% | 41.5% |
| None | — | 0.51 | 41.0 | 2.72e-01 | 100.0% | 78.0% | |
| 5077394 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.51 | 41.0 | 3.08e-01 | 92.9% | 52.2% |
| 3964746 | 101.1.2.628 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF26433 | 0.51 | 46.0 | 3.38e-01 | 100.0% | 54.3% |
| 4192750 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.51 | 40.0 | 2.85e-01 | 100.0% | 82.5% |
D2
high
residues 65-132
Domain cluster:
rep: NC_042018.1__YP_009612901.1__FDI45_gp157__00157__D21-108