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S2_005_003_R2_scaffold_22_prodigal-single.1__X__X__00214
Bact-VirS2_005_003_R2_scaffold_22_prodigal-single.1__X__X__00214
Identity
- Kingdom:
- phage
Quality
85.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-26_219-348
Domain cluster:
rep: IMGVR_UViG_2529292698_000003-2529292698-2529621123__D4-162
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18406.7 best | DUF1281_C | 30.4 | 4.00e-07 | 64.0% | 71.6% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ijrA01 | 3.30.70.1270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Api92-like domains | 0.90 | 55.0 | 6.96e-01 | 81.0% | 96.9% |
| 2fgcA03 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.72 | 34.0 | 4.80e-01 | 91.5% | 92.1% |
| 4i0wA00 | 3.30.70.2980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 31.0 | 3.90e-01 | 84.3% | 68.5% |
| 1zpvA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.68 | 38.0 | 5.01e-01 | 95.4% | 98.8% |
| 1gmuA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.68 | 30.0 | 4.36e-01 | 86.9% | 92.5% |
| 2nyiA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.68 | 36.0 | 4.87e-01 | 95.4% | 98.8% |
| 1eayD00 | 3.30.70.400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CheY-binding domain of CheA | 0.68 | 32.0 | 4.62e-01 | 85.0% | 100.0% |
| 3qfhA01 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.67 | 31.0 | 4.48e-01 | 85.0% | 100.0% |
| 1lfpA03 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.67 | 33.0 | 4.54e-01 | 89.5% | 95.9% |
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.67 | 30.0 | 4.27e-01 | 88.2% | 91.3% |
| 1konA03 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.67 | 32.0 | 4.39e-01 | 88.2% | 90.7% |
| 2vd3A03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 33.0 | 4.57e-01 | 90.8% | 97.3% |
| 2gj2A00 | 3.30.70.2070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › VP9 protein domain | 0.66 | 34.0 | 4.51e-01 | 92.8% | 93.7% |
| 3tqeA02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.66 | 32.0 | 4.59e-01 | 85.6% | 98.6% |
| 3g87A02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.66 | 30.0 | 4.47e-01 | 85.6% | 100.0% |
| 4qjvA03 | 3.30.70.3110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 29.0 | 4.36e-01 | 82.4% | 100.0% |
| 1zpwX00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 36.0 | 4.78e-01 | 89.5% | 98.8% |
| 3tj8A02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.65 | 29.0 | 4.09e-01 | 88.2% | 86.5% |
| 4dezA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.62 | 40.0 | 4.90e-01 | 82.4% | 100.0% |
| 7vxrA01 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.61 | 35.0 | 4.29e-01 | 90.8% | 87.8% |
| 2kdoA03 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 31.0 | 4.07e-01 | 87.6% | 93.8% |
| 1i72A00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.54 | 43.0 | 3.63e-01 | 83.0% | 57.4% |
| 5tvfD00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.54 | 43.0 | 3.54e-01 | 83.0% | 59.6% |
| 1hqiA00 | 3.90.56.10 | Alpha Beta › Alpha-Beta Complex › Phenol Hydroxylase P2 Protein › Monooxygenase component MmoB/DmpM | 0.52 | 31.0 | 3.97e-01 | 83.7% | 100.0% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4299576 | 304.8.1.7 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C | 0.74 | 36.0 | 4.86e-01 | 91.5% | 86.7% |
| 5251 | 304.8.1.7 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C | 0.72 | 34.0 | 4.61e-01 | 91.5% | 84.3% |
| 3373939 | 304.11.1.11 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › SBDS_C | 0.71 | 37.0 | 4.92e-01 | 99.3% | 95.0% |
| 3953844 | 304.24.1.34 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF3145 | 0.70 | 48.0 | 4.97e-01 | 83.0% | 73.8% |
| 5082240 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.69 | 31.0 | 4.15e-01 | 84.3% | 78.8% |
| 5025261 | 304.57.1.0 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like | 0.69 | 33.0 | 4.33e-01 | 87.6% | 81.2% |
| 4295716 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.68 | 33.0 | 4.62e-01 | 89.5% | 98.6% |
| 4931433 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.68 | 33.0 | 4.65e-01 | 88.9% | 100.0% |
| 4999682 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.67 | 34.0 | 4.71e-01 | 91.5% | 98.7% |
| 4956873 | 2.1.1.374 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF2110_C | 0.67 | 36.0 | 3.46e-01 | 79.7% | 44.4% |
| 3404332 | 304.7.1.1 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 | 0.67 | 36.0 | 4.62e-01 | 99.3% | 90.0% |
| 64876 | 304.8.1.7 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C | 0.66 | 35.0 | 4.63e-01 | 75.8% | 92.9% |
| 3402464 | 304.56.1.10 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › R1_ABCA1 | 0.66 | 40.0 | 4.58e-01 | 90.2% | 80.9% |
| 3603319 | 304.8.1.7 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C | 0.65 | 35.0 | 4.73e-01 | 75.2% | 100.0% |
| 5045812 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.65 | 35.0 | 4.54e-01 | 90.2% | 97.5% |
| 3506427 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.64 | 35.0 | 3.86e-01 | 73.2% | 64.8% |
| 4936417 | 304.26.1.3 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › DUF2102 | 0.64 | 32.0 | 3.79e-01 | 88.9% | 68.6% |
| 4976695 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.62 | 34.0 | 4.22e-01 | 89.5% | 87.8% |
| 4965339 | 304.8.1.7 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C | 0.62 | 34.0 | 4.41e-01 | 75.8% | 100.0% |
| 3244570 | 304.7.1.4 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › S8_pro-domain | 0.61 | 33.0 | 4.25e-01 | 99.3% | 92.9% |
| 5045854 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.61 | 24.0 | 3.29e-01 | 75.2% | 68.8% |
| 3612001 | 304.164.1.0 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein NegoA.19184.a C-terminal domain › Hypothetical protein NegoA.19184.a C-terminal domain | 0.61 | 31.0 | 4.06e-01 | 85.0% | 91.3% |
| 4952701 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.56 | 41.0 | 3.13e-01 | 74.5% | 70.9% |
| 3969033 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.55 | 39.0 | 3.34e-01 | 88.2% | 45.7% |
| 4415556 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.55 | 43.0 | 3.90e-01 | 83.0% | 84.3% |
| 3973638 | 331.10.1.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase | 0.55 | 43.0 | 3.76e-01 | 83.0% | 77.3% |
| 5047861 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.54 | 37.0 | 3.17e-01 | 89.5% | 44.0% |
| 3593007 | 331.10.1.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase | 0.53 | 47.0 | 3.84e-01 | 99.3% | 94.6% |
| 4030568 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.52 | 47.0 | 3.69e-01 | 99.3% | 96.1% |
| 5079230 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.50 | 30.0 | 3.51e-01 | 83.7% | 84.8% |
D2
high
residues 33-210
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06924.17 best | DUF1281 | 90.5 | 1.30e-25 | 97.2% | 87.6% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ijrA02 | 1.10.3530.10 | Mainly Alpha › Orthogonal Bundle › Api92-like › Api92-like | 0.91 | 84.0 | 8.47e-01 | 100.0% | 95.0% |
| 3rf7A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.54 | 36.0 | 3.69e-01 | 99.4% | 67.4% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3527 | 4314.1.1.1 ↗ | alpha arrays › helical domain in Api92-like proteins › helical domain in Api92-like proteins › helical domain in Api92-like proteins › DUF1281 | 0.91 | 84.0 | 8.45e-01 | 100.0% | 94.4% |
| 4526998 | 4314.1.1.1 ↗ | alpha arrays › helical domain in Api92-like proteins › helical domain in Api92-like proteins › helical domain in Api92-like proteins › DUF1281 | 0.90 | 64.0 | 7.56e-01 | 73.6% | 99.2% |