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S2_005_003_R2_scaffold_22_prodigal-single.1__X__X__00215
Bact-VirS2_005_003_R2_scaffold_22_prodigal-single.1__X__X__00215
Identity
- Kingdom:
- phage
Quality
70.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-144
Domain cluster:
rep: SRR1747021_scaffold_144_prodigal-single.1__X__X__00067__D37-190
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ttgA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.77 | 44.0 | 3.12e-01 | 100.0% | 20.2% |
| 1wosA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.74 | 43.0 | 5.06e-01 | 100.0% | 81.4% |
| 3girA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.72 | 43.0 | 5.15e-01 | 99.2% | 89.7% |
| 2wanA01 | 2.60.40.1130 | Mainly Beta › Sandwich › Immunoglobulin-like › Rab geranylgeranyltransferase alpha-subunit, insert domain | 0.61 | 39.0 | 4.36e-01 | 100.0% | 82.1% |
| 2ausC02 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.61 | 39.0 | 3.31e-01 | 94.2% | 39.6% |
| 5zneA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 33.0 | 3.97e-01 | 92.5% | 86.3% |
| 5fiiB00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 34.0 | 4.03e-01 | 73.3% | 87.2% |
| 4oi3A00 | 3.30.70.3090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer | 0.57 | 34.0 | 3.99e-01 | 98.3% | 86.4% |
| 4h4kA01 | 3.30.70.2940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 35.0 | 3.99e-01 | 90.0% | 83.1% |
| 6bq9A02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.57 | 37.0 | 4.11e-01 | 82.5% | 85.1% |
| 5eokA05 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 42.0 | 3.38e-01 | 87.5% | 73.9% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 39.0 | 4.12e-01 | 98.3% | 90.8% |
| 3rh7A02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.50 | 35.0 | 3.44e-01 | 81.7% | 66.7% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3952336 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.79 | 51.0 | 4.73e-01 | 100.0% | 52.7% |
| 3970471 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.79 | 50.0 | 4.68e-01 | 100.0% | 53.1% |
| 3952346 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.77 | 51.0 | 4.75e-01 | 100.0% | 55.2% |
| 3283466 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.76 | 50.0 | 4.66e-01 | 100.0% | 54.5% |
| 3838089 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.74 | 47.0 | 4.57e-01 | 100.0% | 57.0% |
| 3838081 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 44.0 | 4.99e-01 | 92.5% | 78.9% |
| 3945977 | 50.1.1.4 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 | 0.73 | 68.0 | 6.07e-01 | 100.0% | 89.1% |
| 3954964 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.72 | 66.0 | 6.23e-01 | 100.0% | 86.9% |
| 3163706 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.68 | 49.0 | 5.16e-01 | 100.0% | 81.8% |
| 4913415 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.63 | 48.0 | 4.67e-01 | 100.0% | 72.0% |
| 4889080 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.63 | 48.0 | 4.67e-01 | 100.0% | 72.0% |
| 3982061 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.63 | 47.0 | 4.64e-01 | 100.0% | 74.4% |
| 4913403 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.62 | 47.0 | 5.05e-01 | 100.0% | 91.3% |
| 4316263 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.62 | 38.0 | 4.52e-01 | 81.7% | 91.3% |
| 5079927 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 40.0 | 4.52e-01 | 95.8% | 87.8% |
| 4322805 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.61 | 38.0 | 4.61e-01 | 80.0% | 95.0% |
| 4969855 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.61 | 37.0 | 4.46e-01 | 76.7% | 92.5% |
| 3814098 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.59 | 41.0 | 4.66e-01 | 80.8% | 94.4% |
| 4029023 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.58 | 43.0 | 4.55e-01 | 100.0% | 86.7% |
| 4461109 | 11.1.1.48 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CelD_N | 0.58 | 34.0 | 3.83e-01 | 100.0% | 75.6% |
| 4649925 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.58 | 42.0 | 3.50e-01 | 91.7% | 43.9% |
| 4966270 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.58 | 41.0 | 4.65e-01 | 93.3% | 97.8% |
| 4519251 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.57 | 35.0 | 4.20e-01 | 98.3% | 92.5% |
| 4972873 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.57 | 38.0 | 4.34e-01 | 91.7% | 96.4% |
| 4557453 | 304.102.1.9 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N, DKCLD, TruB_C_2, Pus10_C | 0.57 | 41.0 | 3.31e-01 | 96.7% | 37.1% |
| 3332693 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.56 | 40.0 | 4.42e-01 | 82.5% | 89.0% |
| 3248167 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.56 | 33.0 | 3.75e-01 | 98.3% | 76.7% |
| 4558386 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.56 | 47.0 | 3.89e-01 | 91.7% | 57.9% |
| 4646504 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.56 | 44.0 | 3.79e-01 | 94.2% | 52.0% |
| 3656348 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 39.0 | 4.36e-01 | 92.5% | 96.7% |
| 3510207 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.54 | 37.0 | 3.25e-01 | 70.8% | 85.8% |