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S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00055
Bact-VirS2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00055
Identity
- Kingdom:
- phage
Quality
86.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-88
Domain cluster:
rep: hypothetical_protein_pneo_cds_364__YP_009481974__Pandoravirus_neocaledonia__2107708__D124-181
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10049.15 best | DUF2283 | 30.8 | 3.60e-07 | 66.2% | 98.0% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gx9A00 | 3.30.420.330 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Influenza virus non-structural protein, effector domain | 0.67 | 46.0 | 3.87e-01 | 70.1% | 47.6% |
| 3na2A00 | 3.40.1570.20 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › | 0.61 | 42.0 | 3.45e-01 | 70.1% | 69.6% |
| 1u9tA02 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.59 | 42.0 | 3.27e-01 | 74.0% | 81.1% |
| 3dkzA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 39.0 | 3.39e-01 | 71.4% | 91.2% |
| 2v3aA03 | 3.30.390.120 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.57 | 42.0 | 4.56e-01 | 89.6% | 96.9% |
| 5k19A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 43.0 | 2.82e-01 | 84.4% | 22.9% |
| 1e0bA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 33.0 | 3.58e-01 | 100.0% | 73.8% |
| 4gb7A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 46.0 | 3.03e-01 | 100.0% | 88.7% |
| 3e29B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 39.0 | 3.35e-01 | 77.9% | 90.3% |
| 5uaoC00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 44.0 | 2.74e-01 | 94.8% | 50.0% |
| 2essA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 47.0 | 3.76e-01 | 94.8% | 79.7% |
| 4mbrA01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 43.0 | 3.56e-01 | 93.5% | 91.3% |
| 3mzkB01 | 6.20.50.30 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.53 | 25.0 | 3.14e-01 | 70.1% | 81.6% |
| 1s28A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 42.0 | 3.60e-01 | 89.6% | 66.2% |
| 5tz6B02 | 3.10.129.120 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › | 0.52 | 45.0 | 3.67e-01 | 100.0% | 88.3% |
| 1nbwA04 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 44.0 | 3.76e-01 | 96.1% | 97.0% |
| 2vz8A04 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.52 | 43.0 | 3.11e-01 | 97.4% | 49.2% |
| 5bp3B00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.51 | 37.0 | 2.69e-01 | 83.1% | 39.0% |
| 1tyjA00 | 2.60.40.680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 42.0 | 3.44e-01 | 100.0% | 95.9% |
| 5umsA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 33.0 | 3.12e-01 | 98.7% | 52.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5012339 | 244.2.1.11 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 | 0.90 | 63.0 | 7.18e-01 | 96.1% | 93.3% |
| 5074846 | 244.2.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain | 0.88 | 61.0 | 6.90e-01 | 71.4% | 93.3% |
| 4999506 | 244.2.1.11 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 | 0.87 | 59.0 | 5.97e-01 | 70.1% | 70.5% |
| 4967553 | 244.2.1.11 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 | 0.87 | 62.0 | 7.06e-01 | 100.0% | 95.0% |
| 5077020 | 244.2.1.11 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 | 0.83 | 66.0 | 7.19e-01 | 89.6% | 98.5% |
| 5027663 | 244.2.1.11 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 | 0.82 | 62.0 | 6.74e-01 | 100.0% | 93.8% |
| 3587483 | 1093.1.1.1 ↗ | a+b two layers › DUF4479 › DUF4479 › DUF4479 › DUF4479 | 0.75 | 65.0 | 6.19e-01 | 93.5% | 98.9% |
| 4966292 | 244.2.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain | 0.74 | 57.0 | 6.20e-01 | 96.1% | 96.9% |
| 3290096 | 244.2.1.11 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 | 0.71 | 59.0 | 5.97e-01 | 100.0% | 90.7% |
| 3282860 | 3380.1.1.0 ↗ | a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 | 0.70 | 56.0 | 5.55e-01 | 89.6% | 83.7% |
| 4336615 | 1093.1.1.0 ↗ | a+b two layers › DUF4479 › DUF4479 › DUF4479 | 0.64 | 56.0 | 5.26e-01 | 97.4% | 96.8% |
| 3955153 | 244.2.1.5 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Reductase_C | 0.64 | 51.0 | 4.84e-01 | 85.7% | 96.7% |
| 3967527 | 4216.1.1.1 ↗ | a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS | 0.63 | 43.0 | 3.35e-01 | 70.1% | 54.4% |
| 4274357 | 244.2.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rbx_binding | 0.61 | 48.0 | 5.05e-01 | 93.5% | 92.9% |
| 140040 | 4216.1.1.3 ↗ | a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › LFE_1968-like | 0.61 | 42.0 | 3.45e-01 | 70.1% | 69.6% |
| 2712668 | 244.2.1.5 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Reductase_C | 0.60 | 49.0 | 4.65e-01 | 88.3% | 93.4% |
| 3259158 | 244.2.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › AIF_C | 0.60 | 50.0 | 4.78e-01 | 89.6% | 83.3% |
| 3943734 | 244.2.1.5 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Reductase_C | 0.60 | 46.0 | 4.48e-01 | 90.9% | 75.3% |
| 3614079 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.59 | 45.0 | 4.22e-01 | 84.4% | 93.9% |
| 4548669 | 244.2.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rbx_binding | 0.59 | 45.0 | 4.63e-01 | 90.9% | 86.7% |
| 4099278 | 244.2.1.5 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Reductase_C | 0.58 | 44.0 | 4.33e-01 | 93.5% | 75.3% |
| 3839745 | 319.3.1.1 ↗ | beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN | 0.54 | 45.0 | 4.17e-01 | 100.0% | 71.0% |
| 3926852 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 37.0 | 3.11e-01 | 71.4% | 99.3% |
| 3386051 | 319.3.1.1 ↗ | beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN | 0.54 | 45.0 | 4.17e-01 | 100.0% | 71.0% |
| 3496646 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.53 | 37.0 | 2.46e-01 | 74.0% | 28.6% |
| 3586112 | 5.1.5.134 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_EIPR1 | 0.52 | 40.0 | 2.88e-01 | 85.7% | 31.8% |
| 3493556 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 39.0 | 3.48e-01 | 100.0% | 56.4% |
| 3790685 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 37.0 | 3.14e-01 | 75.3% | 89.2% |
| 3621257 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.52 | 34.0 | 3.49e-01 | 94.8% | 70.7% |
| 168661 | 4258.1.1.1 ↗ | mixed a+b and a/b › Ns1 effector domain-like › Ns1 effector domain-like › Ns1 effector domain-like › Flu_NS1 | 0.51 | 45.0 | 3.88e-01 | 100.0% | 86.6% |
| 1949141 | 244.1.1.8 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Trp_halogenase | 0.51 | 41.0 | 3.99e-01 | 92.2% | 82.8% |
| 1414921 | 220.1.1.12 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 | 0.51 | 39.0 | 3.07e-01 | 84.4% | 89.4% |
| None | — | 0.50 | 44.0 | 2.77e-01 | 100.0% | 54.1% |