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S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00243

Bact-Vir

S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00243

Identity

Kingdom:
phage

Quality

91.0 mean pLDDT

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-82
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.70 56.0 5.76e-01 87.8% 89.7%
1e3oC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 27.0 3.43e-01 72.0% 68.8%
3a1sA02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 35.0 3.47e-01 84.1% 55.7%
3bg2A03 1.10.3410.10 Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain 0.56 44.0 4.23e-01 86.6% 94.8%
1b72A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 29.0 3.19e-01 73.2% 61.8%
3k53A02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 35.0 3.37e-01 95.1% 57.1%
6cnzF00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.51 43.0 3.49e-01 92.7% 58.2%
3ljcA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 40.0 3.62e-01 92.7% 73.0%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053761 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 36.0 3.65e-01 85.4% 65.0%
3247035 206.1.1.28 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Haspin_kinase 0.56 45.0 3.06e-01 90.2% 23.6%
4984088 7527.1.1.2 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.50 43.0 2.84e-01 97.6% 48.2%
3219867 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.50 44.0 4.35e-01 98.8% 98.8%
D2 medium residues 83-189
PDB
Domain cluster: rep: IMGVR_UViG_3300025859_001166-3300025859-Ga0209096_100026138__D12-148
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dmuA00 3.40.600.20 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Restriction endonuclease BglI 0.67 57.0 4.13e-01 92.5% 60.5%
2eo0B00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.65 52.0 4.96e-01 99.1% 73.4%
1b96A00 3.40.600.10 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II 0.65 54.0 4.16e-01 91.6% 54.1%
1tx3D00 3.40.600.10 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II 0.60 49.0 3.82e-01 89.7% 52.9%
1azoA00 3.40.600.10 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II 0.59 47.0 3.81e-01 86.9% 96.3%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.57 50.0 3.86e-01 100.0% 67.5%
2c12A02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.55 42.0 3.91e-01 80.4% 97.8%
2xi5A00 3.40.91.60 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.55 37.0 3.14e-01 96.3% 40.8%
2kcqA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 46.0 4.13e-01 99.1% 79.1%
2qwvA00 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.52 42.0 3.52e-01 88.8% 65.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027628 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.74 69.0 5.56e-01 100.0% 61.0%
4284098 2008.1.1.198 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF6998 0.73 51.0 4.80e-01 90.7% 60.0%
4329875 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.66 46.0 4.39e-01 72.0% 69.6%
4084414 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.65 46.0 4.20e-01 72.9% 84.3%
4407114 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.61 43.0 4.18e-01 72.9% 74.2%
4142063 2008.1.1.179 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_ScaI 0.59 50.0 4.24e-01 93.5% 56.8%
3904622 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.57 45.0 3.81e-01 89.7% 51.4%
5014837 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.52 40.0 3.54e-01 85.0% 97.7%
5077279 1.1.9.35 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.51 38.0 3.67e-01 78.5% 86.7%
4888734 11.24.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › N-terminal Ig-like domain in baseplate protein ORF48 › N-terminal Ig-like domain in baseplate protein ORF48 › BppU_N 0.51 35.0 3.35e-01 70.1% 95.2%
4033347 11.24.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › N-terminal Ig-like domain in baseplate protein ORF48 › N-terminal Ig-like domain in baseplate protein ORF48 › BppU_N 0.51 35.0 3.33e-01 72.0% 74.6%