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S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00336

Bact-Vir

S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00336

Identity

Kingdom:
phage

Quality

92.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-91
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ya0A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.74 56.0 4.30e-01 81.3% 65.5%
4flbA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.71 62.0 5.47e-01 96.7% 94.7%
1elkA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.69 57.0 4.85e-01 91.2% 94.1%
3ltjA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.67 59.0 4.70e-01 100.0% 50.8%
6idxA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.66 58.0 4.45e-01 100.0% 79.5%
1te4A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 54.0 5.47e-01 91.2% 100.0%
6wm2P02 1.25.40.150 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › V-type ATPase, subunit H, C-terminal domain 0.65 50.0 4.78e-01 83.5% 93.6%
1q2zA00 1.25.40.240 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain 0.65 56.0 5.19e-01 98.9% 98.3%
6ok0B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 54.0 4.99e-01 100.0% 93.3%
2yvyA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.60 52.0 4.78e-01 100.0% 79.2%
3mzoB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.60 45.0 3.55e-01 82.4% 91.9%
6orcB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 51.0 4.56e-01 100.0% 84.3%
4a64A01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.59 44.0 4.01e-01 82.4% 93.2%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.57 43.0 4.49e-01 81.3% 94.9%
1ji0A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 45.0 3.36e-01 92.3% 46.9%
4g12A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 41.0 3.51e-01 84.6% 98.0%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 39.0 3.58e-01 83.5% 88.5%
2q14A02 1.20.1250.30 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.50 40.0 3.35e-01 87.9% 74.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4943436 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.71 63.0 4.40e-01 100.0% 32.9%
3681307 109.4.1.1266 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB 0.69 60.0 4.02e-01 100.0% 41.8%
3352955 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 61.0 4.72e-01 100.0% 71.7%
3733993 109.4.1.102 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › WAPL 0.67 57.0 3.73e-01 96.7% 47.6%
4959039 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.67 59.0 4.79e-01 100.0% 55.6%
4548949 109.4.1.228 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo84_C 0.67 59.0 4.32e-01 100.0% 69.6%
3471543 4015.1.1.0 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins 0.64 48.0 3.41e-01 81.3% 39.0%
4455495 176.1.1.1 ↗ alpha arrays › Annexin › Annexin › Annexin › Annexin 0.63 43.0 4.67e-01 71.4% 100.0%
3467321 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 51.0 4.52e-01 100.0% 73.8%
3657018 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 45.0 3.52e-01 97.8% 99.5%
D2 medium residues 92-146
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wjtA00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.74 63.0 5.21e-01 100.0% 71.8%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.68 48.0 4.61e-01 74.5% 93.7%
3nb2A02 1.25.40.300 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein 0.68 57.0 4.23e-01 100.0% 57.4%
5yhhA00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.67 50.0 3.50e-01 83.6% 58.5%
1n00A03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.65 53.0 4.93e-01 96.4% 94.5%
2qw6D00 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.59 46.0 4.11e-01 90.9% 75.6%
2gnoA03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.58 40.0 3.37e-01 72.7% 85.0%
1whuA00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.55 37.0 3.17e-01 72.7% 62.5%
3cqyB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 43.0 3.15e-01 100.0% 58.2%
2ychA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 37.0 3.01e-01 83.6% 71.9%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979939 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.74 62.0 4.35e-01 96.4% 33.9%
4890285 109.4.1.1283 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_PBS, HEAT_2 0.73 61.0 5.67e-01 96.4% 85.9%
3736598 109.4.1.522 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPAP1_C 0.65 54.0 3.88e-01 100.0% 47.9%
3627331 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.65 52.0 3.99e-01 96.4% 53.1%
3902188 185.1.3.1 ↗ alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › GDNF receptor › GDNF 0.60 41.0 3.74e-01 72.7% 81.2%
3794203 101.11.1.0 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.57 39.0 3.47e-01 72.7% 77.6%
4028663 545.1.2.0 ↗ alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain 0.51 39.0 3.23e-01 90.9% 93.9%
3673090 529.1.1.0 ↗ few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) 0.51 37.0 3.49e-01 83.6% 79.7%
D3 medium residues 147-227
PDB
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cwhA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.81 72.0 5.83e-01 100.0% 69.9%
8sorA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.79 71.0 4.63e-01 100.0% 31.1%
6t0bf00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.75 64.0 5.95e-01 95.1% 89.2%
4d49A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.75 66.0 4.75e-01 100.0% 47.9%
3ismC01 1.25.40.240 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain 0.73 63.0 5.17e-01 97.5% 88.3%
5z62E00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.71 62.0 5.65e-01 98.8% 89.0%
1te4A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.70 61.0 5.98e-01 100.0% 100.0%
5mj6A04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.69 60.0 4.06e-01 100.0% 98.8%
4kx7A04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.69 59.0 4.01e-01 98.8% 70.9%
6idxA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.68 58.0 4.36e-01 100.0% 55.3%
4wz9A04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.67 59.0 3.98e-01 100.0% 36.2%
4f5cA04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.67 58.0 3.92e-01 100.0% 34.0%
1n00A01 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.66 47.0 4.72e-01 76.5% 90.5%
2ii2A03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.66 48.0 4.52e-01 77.8% 81.6%
6srbA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 49.0 4.48e-01 80.2% 78.9%
2ii2A04 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.65 46.0 4.70e-01 75.3% 100.0%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 56.0 4.78e-01 100.0% 83.9%
2yv7A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 54.0 4.59e-01 95.1% 92.0%
3zheC01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 55.0 4.33e-01 100.0% 63.6%
2z16B01 1.20.91.10 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Influenza matrix M1, N-terminal subdomain 1 0.63 43.0 4.41e-01 70.4% 75.6%
2yvyA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.63 53.0 4.74e-01 100.0% 72.8%
5aj3N01 1.10.287.1480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 32.0 3.08e-01 74.1% 42.9%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 46.0 4.18e-01 82.7% 85.0%
6orcB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 52.0 4.50e-01 100.0% 74.6%
2a0uB01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.58 46.0 3.72e-01 86.4% 66.9%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.57 45.0 4.60e-01 88.9% 96.2%
4nq0A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 47.0 3.43e-01 100.0% 68.9%
4l22A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.55 47.0 3.05e-01 100.0% 82.8%
1f05A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 47.0 3.20e-01 100.0% 35.1%
6dcjA02 1.25.40.650 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 44.0 4.08e-01 88.9% 81.7%
5dckA00 1.10.1200.30 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Retrovirus capsid C-terminal domain 0.51 35.0 3.69e-01 71.6% 94.4%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3715444 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.75 67.0 4.68e-01 100.0% 56.9%
5050386 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.75 66.0 3.99e-01 100.0% 18.0%
4979939 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.74 65.0 5.05e-01 100.0% 49.4%
5015099 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 62.0 4.66e-01 96.3% 44.8%
3207040 109.4.1.1446 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT, HEAT_RRP12_N 0.73 64.0 3.55e-01 100.0% 11.9%
5044891 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 64.0 4.19e-01 100.0% 27.5%
3422073 109.4.1.1310 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TRIP12_N 0.73 65.0 4.87e-01 100.0% 59.5%
3198922 109.4.1.1344 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28737 0.72 64.0 4.47e-01 100.0% 34.7%
4944166 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.72 64.0 3.78e-01 100.0% 14.2%
3770943 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.71 64.0 5.09e-01 100.0% 70.0%
3429997 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.71 59.0 5.38e-01 90.1% 82.9%
3402822 109.4.1.1564 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28736, PF28737 0.70 62.0 3.89e-01 100.0% 21.3%
4462190 109.4.1.1283 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_PBS, HEAT_2 0.69 61.0 4.35e-01 100.0% 48.8%
5021502 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.69 62.0 5.00e-01 100.0% 60.0%
3207747 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 60.0 4.49e-01 100.0% 56.2%
4959039 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.68 60.0 4.70e-01 100.0% 49.4%
3880040 109.4.1.158 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ERAP1_C 0.68 58.0 3.91e-01 100.0% 31.3%
3520863 109.4.1.472 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RAI16-like 0.67 58.0 3.87e-01 100.0% 64.9%
5048415 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 58.0 5.00e-01 100.0% 71.9%
3928663 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.67 46.0 4.52e-01 72.8% 94.4%
4455495 176.1.1.1 ↗ alpha arrays › Annexin › Annexin › Annexin › Annexin 0.66 48.0 4.94e-01 77.8% 100.0%
3645609 109.4.1.121 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mo25 0.65 56.0 3.77e-01 100.0% 38.6%
4017466 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 55.0 3.76e-01 100.0% 32.9%
3252922 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.60 51.0 3.77e-01 100.0% 50.0%
3264205 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.58 48.0 3.99e-01 97.5% 84.4%
4048456 604.34.1.1 ↗ alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB 0.58 41.0 4.06e-01 76.5% 91.1%
3454770 109.4.1.621 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3 0.57 47.0 3.36e-01 95.1% 47.1%
5028736 316.1.1.41 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF6036 0.55 43.0 3.20e-01 86.4% 84.9%