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S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00353

Bact-Vir

S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00353

Identity

Kingdom:
phage

Quality

92.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-92
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00149.34 best Metallophos 30.5 6.70e-07 98.9% 38.7%
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u37A02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.72 65.0 4.73e-01 100.0% 81.5%
7s0tF01 3.60.21.50 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › 0.72 65.0 4.46e-01 100.0% 40.6%
5fc1A01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.72 65.0 4.20e-01 100.0% 37.8%
1ii7A01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.71 65.0 4.68e-01 100.0% 43.0%
5fi9A01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.71 64.0 4.14e-01 100.0% 41.1%
3do6A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 62.0 4.28e-01 100.0% 74.5%
7upvA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.69 60.0 3.95e-01 100.0% 58.6%
3mbdA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 59.0 4.04e-01 100.0% 34.8%
3rl3A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.66 61.0 4.27e-01 100.0% 36.2%
3av0A01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.66 60.0 4.32e-01 100.0% 42.4%
1q7zA01 3.20.20.330 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain 0.66 58.0 4.08e-01 100.0% 38.0%
3k1dA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.65 57.0 3.80e-01 100.0% 52.0%
6iheA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 57.0 5.00e-01 98.9% 98.6%
3r4vA01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.64 47.0 3.36e-01 78.3% 37.8%
3uueA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.64 55.0 3.99e-01 97.8% 54.5%
1hyhA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 56.0 4.90e-01 100.0% 97.9%
1eucB03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.63 57.0 4.88e-01 100.0% 78.1%
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.62 51.0 3.12e-01 91.3% 80.0%
1mldA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 53.0 4.65e-01 97.8% 98.6%
5b5lA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.61 54.0 4.22e-01 100.0% 78.3%
7zs9401 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.61 54.0 4.11e-01 100.0% 92.4%
3bs4A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 53.0 3.93e-01 100.0% 64.1%
5y58A01 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.59 52.0 4.00e-01 100.0% 92.8%
1itcA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 51.0 3.39e-01 100.0% 36.5%
2ap1A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 51.0 4.28e-01 100.0% 99.4%
5jicA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 51.0 4.15e-01 98.9% 95.1%
2z1aA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.58 51.0 3.61e-01 100.0% 35.4%
3vu9A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 51.0 3.94e-01 100.0% 65.6%
2ivnA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 49.0 4.23e-01 98.9% 99.4%
3czpA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 49.0 3.72e-01 100.0% 75.2%
6nbrC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 50.0 3.51e-01 100.0% 57.6%
6jdbA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 49.0 4.23e-01 100.0% 99.3%
3jyhA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 47.0 3.38e-01 95.7% 50.8%
3cqyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 48.0 3.97e-01 100.0% 90.2%
2q1sA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 48.0 3.66e-01 100.0% 67.1%
3pdiA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.56 48.0 4.15e-01 98.9% 66.9%
2ychA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 47.0 4.43e-01 100.0% 100.0%
2ohhA02 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.55 48.0 4.22e-01 98.9% 82.6%
3hc7A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 48.0 3.86e-01 98.9% 58.9%
3c0bA02 3.30.420.190 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › conserved archaeal protein q6m145 0.55 47.0 3.69e-01 100.0% 82.3%
1e9fA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 47.0 3.76e-01 100.0% 66.3%
4jgiB02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.54 49.0 4.40e-01 100.0% 84.1%
4l6wB01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.54 47.0 3.90e-01 100.0% 56.3%
3zbqA00 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.53 47.0 3.29e-01 100.0% 30.5%
5uivA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 45.0 3.54e-01 100.0% 73.3%
3bexA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 44.0 4.23e-01 98.9% 99.1%
3h8lA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 41.0 3.63e-01 94.6% 74.8%
3icfB00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.50 45.0 3.11e-01 100.0% 35.4%
1fcdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 42.0 3.72e-01 94.6% 69.1%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3253338 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.75 69.0 4.79e-01 100.0% 38.4%
5046597 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.74 67.0 4.76e-01 100.0% 47.3%
5070377 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.71 64.0 4.65e-01 100.0% 45.1%
5011069 246.2.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.71 65.0 5.22e-01 100.0% 53.1%
4974960 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.70 63.0 4.61e-01 100.0% 44.5%
3592162 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.69 62.0 4.42e-01 100.0% 33.7%
4066993 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.69 62.0 4.49e-01 100.0% 38.8%
4558117 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.68 61.0 4.47e-01 100.0% 39.2%
3302952 2006.1.6.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Sec23_trunk 0.67 59.0 4.37e-01 100.0% 90.8%
3256793 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.67 61.0 4.22e-01 100.0% 35.7%
4012030 246.2.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.67 61.0 4.23e-01 100.0% 31.2%
5024200 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.66 60.0 4.29e-01 100.0% 35.0%
5075409 2007.3.1.0 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains 0.66 57.0 4.65e-01 100.0% 82.6%
3398095 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.65 60.0 4.12e-01 100.0% 42.4%
5079065 2002.1.1.137 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MtmB 0.65 57.0 3.69e-01 100.0% 24.2%
3269295 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.65 58.0 4.47e-01 100.0% 80.0%
3683347 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.64 57.0 4.14e-01 100.0% 81.5%
5023954 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.64 56.0 3.98e-01 100.0% 36.3%
3543026 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.64 59.0 4.02e-01 100.0% 42.6%
3740167 2002.1.1.4 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase 0.64 55.0 3.84e-01 100.0% 53.3%
4019392 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 54.0 3.67e-01 96.7% 29.0%
3659669 2006.1.6.12 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.62 56.0 4.13e-01 100.0% 76.6%
3169595 2004.1.1.215 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PSY3 0.61 53.0 4.01e-01 100.0% 66.7%
4935626 2007.3.1.6 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 0.61 54.0 4.43e-01 100.0% 88.8%
3968080 2007.3.1.0 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains 0.61 53.0 4.45e-01 100.0% 85.5%
4020481 2002.1.1.3 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TIM 0.60 51.0 3.82e-01 100.0% 56.2%
5057273 2006.1.6.12 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.59 53.0 4.23e-01 100.0% 85.4%
3326202 2006.1.6.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Sec23_trunk 0.59 52.0 3.86e-01 100.0% 80.0%
4983544 2007.3.1.6 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 0.59 53.0 4.29e-01 100.0% 81.1%
4939229 2006.1.6.45 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › PF30231 0.59 51.0 4.08e-01 100.0% 85.9%
4493052 2003.1.8.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › MurCD/PglD N-terminal domain-like 0.58 36.0 3.61e-01 79.3% 60.0%
3180646 7579.1.1.11 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Cutinase 0.57 50.0 3.76e-01 100.0% 78.0%
167754 2484.1.1.41 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.56 49.0 3.33e-01 100.0% 43.5%
4041226 2484.1.1.263 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA, EutA, FtsA 0.56 48.0 3.27e-01 100.0% 83.0%
3207917 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.56 50.0 3.64e-01 100.0% 72.9%
3711000 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 48.0 3.86e-01 100.0% 73.2%
5004671 2006.1.6.12 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.54 46.0 3.35e-01 100.0% 74.3%
4996596 7569.1.1.5 a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › DUF6884 0.54 46.0 4.01e-01 97.8% 85.3%
3960447 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 47.0 3.57e-01 100.0% 79.6%
3931420 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.54 46.0 3.48e-01 100.0% 44.0%
4046038 2484.6.1.1 mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR › ExbD 0.53 40.0 4.25e-01 98.9% 92.5%
5002427 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.53 46.0 3.76e-01 98.9% 63.9%
2099763 2004.1.1.79 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.53 45.0 3.54e-01 100.0% 73.3%
169245 2004.1.1.79 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.53 45.0 3.62e-01 100.0% 70.1%
4097535 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.53 45.0 4.12e-01 100.0% 90.8%
5082845 7512.1.1.51 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_2 0.52 46.0 3.72e-01 100.0% 59.2%
11232 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.52 45.0 4.10e-01 98.9% 88.2%
D2 medium residues 93-226
PDB