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S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00403
Bact-VirS2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00403
Identity
- Kingdom:
- phage
Quality
74.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 33-83
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jd9G00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.87 | 71.0 | 5.27e-01 | 92.2% | 37.5% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.86 | 74.0 | 7.20e-01 | 96.1% | 94.7% |
| 1icrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.83 | 69.0 | 4.42e-01 | 92.2% | 21.3% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.82 | 65.0 | 5.19e-01 | 90.2% | 45.8% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.78 | 66.0 | 5.54e-01 | 100.0% | 54.9% |
| 3dd9D02 | 6.10.140.2060 | Special › Helix non-globular › Helix Hairpins › | 0.77 | 56.0 | 5.98e-01 | 86.3% | 100.0% |
| 3qxzA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.76 | 60.0 | 5.69e-01 | 96.1% | 73.3% |
| 2fnaA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.75 | 55.0 | 4.88e-01 | 84.3% | 53.9% |
| 3tixB03 | 3.40.50.11490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.74 | 56.0 | 4.04e-01 | 88.2% | 28.9% |
| 2mh3A00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.72 | 49.0 | 4.39e-01 | 72.5% | 51.4% |
| 6zhiB02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.72 | 53.0 | 4.48e-01 | 78.4% | 48.2% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 48.0 | 4.72e-01 | 74.5% | 64.3% |
| 1hlvA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 52.0 | 4.96e-01 | 82.4% | 68.3% |
| 3d5lA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 50.0 | 5.07e-01 | 84.3% | 78.8% |
| 1j78A05 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.70 | 56.0 | 5.31e-01 | 94.1% | 75.0% |
| 3ufeA02 | 1.20.58.1950 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 50.0 | 4.99e-01 | 88.2% | 75.5% |
| 3k6hA01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.69 | 54.0 | 3.82e-01 | 88.2% | 68.3% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.69 | 51.0 | 4.74e-01 | 78.4% | 71.9% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.68 | 55.0 | 4.86e-01 | 90.2% | 94.7% |
| 1b3qA01 | 1.10.287.560 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain | 0.66 | 51.0 | 4.78e-01 | 82.4% | 71.0% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.66 | 54.0 | 4.86e-01 | 96.1% | 98.6% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.65 | 55.0 | 4.41e-01 | 100.0% | 51.9% |
| 3t38A01 | 1.10.8.1060 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain | 0.65 | 54.0 | 4.94e-01 | 100.0% | 71.8% |
| 4ex8A00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.65 | 55.0 | 3.43e-01 | 100.0% | 30.6% |
| 3u9rB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.64 | 53.0 | 3.44e-01 | 100.0% | 43.3% |
| 4fvmA06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.64 | 49.0 | 5.12e-01 | 82.4% | 100.0% |
| 1chuA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.64 | 48.0 | 4.02e-01 | 82.4% | 55.7% |
| 2i53A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 50.0 | 3.97e-01 | 90.2% | 45.0% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.61 | 44.0 | 3.81e-01 | 84.3% | 45.6% |
| 1cunA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 52.0 | 4.12e-01 | 94.1% | 47.1% |
| 3rx6A00 | 1.20.58.1090 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer | 0.61 | 55.0 | 3.68e-01 | 100.0% | 28.3% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 53.0 | 4.75e-01 | 100.0% | 70.8% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 53.0 | 4.62e-01 | 98.0% | 85.5% |
| 1eyqA02 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.60 | 46.0 | 3.43e-01 | 94.1% | 42.8% |
| 4fybA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 49.0 | 3.43e-01 | 94.1% | 68.9% |
| 2yqzA02 | 1.10.8.900 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 46.0 | 4.34e-01 | 98.0% | 94.1% |
| 4a17U01 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 50.0 | 4.37e-01 | 98.0% | 68.8% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.53 | 47.0 | 3.81e-01 | 100.0% | 64.6% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3650452 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.88 | 71.0 | 7.46e-01 | 96.1% | 100.0% |
| 4024271 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.84 | 73.0 | 5.29e-01 | 98.0% | 36.3% |
| 4319975 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.83 | 71.0 | 5.94e-01 | 100.0% | 55.6% |
| 4327215 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.82 | 70.0 | 5.43e-01 | 100.0% | 43.5% |
| None | — | 0.81 | 69.0 | 4.33e-01 | 100.0% | 18.2% | |
| 5025586 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.78 | 63.0 | 5.63e-01 | 100.0% | 62.7% |
| 3631018 | 109.4.1.560 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mus7 | 0.77 | 63.0 | 3.51e-01 | 100.0% | 7.2% |
| 3208600 | 109.4.1.560 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mus7 | 0.75 | 67.0 | 4.13e-01 | 100.0% | 18.2% |
| 3588971 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.73 | 62.0 | 5.51e-01 | 98.0% | 66.7% |
| 4241236 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.72 | 61.0 | 5.28e-01 | 96.1% | 76.2% |
| 3979831 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.69 | 48.0 | 4.47e-01 | 80.4% | 58.5% |
| 3841941 | 7512.1.1.4 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_10 | 0.69 | 51.0 | 3.29e-01 | 80.4% | 16.7% |
| 3533067 | 101.1.2.352 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 | 0.69 | 49.0 | 4.52e-01 | 78.4% | 58.6% |
| 3941001 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.68 | 58.0 | 3.59e-01 | 96.1% | 19.3% |
| 3359312 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.68 | 57.0 | 5.08e-01 | 98.0% | 64.0% |
| 3739404 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.68 | 54.0 | 3.52e-01 | 92.2% | 18.4% |
| 3681259 | 5058.1.1.57 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › V-SNARE | 0.68 | 55.0 | 4.63e-01 | 88.2% | 64.7% |
| 3755564 | 1021.1.1.2 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD | 0.68 | 58.0 | 4.53e-01 | 94.1% | 52.4% |
| 3726085 | 101.1.2.127 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 | 0.68 | 50.0 | 4.37e-01 | 84.3% | 50.6% |
| 3680918 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.66 | 57.0 | 5.32e-01 | 100.0% | 93.8% |
| 4942992 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.66 | 45.0 | 4.54e-01 | 72.5% | 74.0% |
| 3962219 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.65 | 52.0 | 3.52e-01 | 100.0% | 21.3% |
| 3971484 | 5063.1.1.2 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › MadL | 0.62 | 50.0 | 4.06e-01 | 100.0% | 46.1% |
| 3924799 | 2484.1.1.107 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 | 0.61 | 49.0 | 3.50e-01 | 92.2% | 70.0% |
| 3488979 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.61 | 54.0 | 3.96e-01 | 96.1% | 59.2% |
| 3344575 | 9.26.1.0 ↗ | beta barrels › Lipocalins/Streptavidin | 0.55 | 46.0 | 3.20e-01 | 100.0% | 74.4% |