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S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00469
Bact-VirS2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00469
Identity
- Kingdom:
- phage
Quality
71.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-83
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tu3B01 | 3.30.720.80 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.71 | 46.0 | 4.77e-01 | 76.5% | 69.7% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.67 | 55.0 | 4.19e-01 | 86.4% | 40.7% |
| 1nycA00 | 2.40.310.10 | Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors | 0.67 | 45.0 | 4.04e-01 | 75.3% | 50.5% |
| 5hy7B02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.66 | 51.0 | 3.37e-01 | 81.5% | 50.3% |
| 4g59B00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.65 | 45.0 | 3.54e-01 | 71.6% | 74.2% |
| 1sgoA01 | 3.30.2280.10 | Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) | 0.65 | 52.0 | 4.72e-01 | 87.7% | 64.8% |
| 7wa9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.65 | 45.0 | 3.76e-01 | 72.8% | 48.2% |
| 4wjsA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.64 | 50.0 | 3.18e-01 | 82.7% | 51.6% |
| 3otlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 41.0 | 3.43e-01 | 71.6% | 47.7% |
| 3rcyB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.60 | 44.0 | 3.73e-01 | 100.0% | 45.4% |
| 2zxkA00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.60 | 52.0 | 3.68e-01 | 100.0% | 70.3% |
| 6qp7A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 48.0 | 2.97e-01 | 90.1% | 28.1% |
| 4gq1A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 47.0 | 3.13e-01 | 90.1% | 34.0% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.58 | 34.0 | 3.21e-01 | 72.8% | 47.5% |
| 7c38B01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.57 | 48.0 | 3.27e-01 | 95.1% | 50.6% |
| 8f5pC01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 47.0 | 3.22e-01 | 91.4% | 44.0% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.57 | 41.0 | 3.52e-01 | 76.5% | 71.0% |
| 1nr0A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 47.0 | 3.20e-01 | 92.6% | 46.2% |
| 2yzyA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.57 | 46.0 | 3.64e-01 | 87.7% | 84.0% |
| 1lshB00 | 2.20.90.10 | Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex; beta-sheet shell regions › Vitellinogen, beta-sheet shell domain | 0.56 | 45.0 | 3.51e-01 | 86.4% | 50.0% |
| 3imhA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 49.0 | 3.30e-01 | 100.0% | 100.0% |
| 1shyB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 48.0 | 3.04e-01 | 97.5% | 36.0% |
| 1ya5T01 | 2.20.160.10 | Mainly Beta › Single Sheet › titin filament fold › titin domain like | 0.56 | 39.0 | 3.91e-01 | 72.8% | 100.0% |
| 8adbA01 | 3.90.70.120 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.56 | 49.0 | 3.65e-01 | 97.5% | 42.5% |
| 2hesX00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 46.0 | 3.15e-01 | 92.6% | 48.7% |
| 4aezA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 46.0 | 3.10e-01 | 92.6% | 40.2% |
| 5ic7A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 46.0 | 3.10e-01 | 95.1% | 57.4% |
| 2kgyA00 | 3.30.505.20 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › | 0.55 | 39.0 | 3.80e-01 | 75.3% | 75.0% |
| 1nr0A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 46.0 | 3.18e-01 | 93.8% | 47.0% |
| 4agiA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.55 | 45.0 | 3.09e-01 | 93.8% | 65.6% |
| 2pm6D01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 47.0 | 3.26e-01 | 96.3% | 35.7% |
| 2b5nB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 48.0 | 3.21e-01 | 98.8% | 44.2% |
| 3gd6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 49.0 | 4.06e-01 | 100.0% | 76.1% |
| 1yf9A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 47.0 | 3.85e-01 | 100.0% | 77.2% |
| 1iucA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.54 | 46.0 | 3.19e-01 | 100.0% | 36.9% |
| 2z4hA01 | 2.40.128.300 | Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain | 0.52 | 37.0 | 3.80e-01 | 76.5% | 98.7% |
| 3d2uE01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.51 | 45.0 | 3.47e-01 | 100.0% | 98.4% |
| 2m89A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 41.0 | 3.51e-01 | 88.9% | 66.4% |
| 3r90A00 | 3.10.400.20 | Alpha Beta › Roll › Sulfate adenylyltransferase › | 0.51 | 36.0 | 2.82e-01 | 75.3% | 94.1% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3484308 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.68 | 51.0 | 3.16e-01 | 80.2% | 40.6% |
| 5079230 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.67 | 58.0 | 5.40e-01 | 100.0% | 86.7% |
| 4195303 | 5087.1.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell | 0.66 | 48.0 | 3.61e-01 | 75.3% | 49.2% |
| 3442611 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.64 | 55.0 | 3.55e-01 | 95.1% | 39.7% |
| 3890276 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.64 | 55.0 | 5.54e-01 | 95.1% | 96.2% |
| 3253390 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.63 | 51.0 | 3.34e-01 | 87.7% | 55.2% |
| 3788239 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.63 | 50.0 | 3.35e-01 | 85.2% | 50.8% |
| 3520126 | 5.1.4.329 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 | 0.62 | 50.0 | 3.27e-01 | 88.9% | 34.4% |
| 3383977 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 51.0 | 2.93e-01 | 92.6% | 22.4% |
| 3593907 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 49.0 | 3.30e-01 | 86.4% | 80.7% |
| 3930592 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.60 | 52.0 | 3.51e-01 | 97.5% | 61.0% |
| 3358533 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.60 | 50.0 | 3.22e-01 | 93.8% | 71.6% |
| 3716115 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 49.0 | 3.29e-01 | 88.9% | 75.7% |
| 3921621 | 2003.1.5.359 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth, Methyltransf_25 | 0.60 | 51.0 | 3.06e-01 | 97.5% | 20.2% |
| 4994698 | 4041.1.1.0 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase | 0.60 | 51.0 | 3.85e-01 | 93.8% | 69.2% |
| 4933430 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.59 | 51.0 | 3.94e-01 | 93.8% | 76.6% |
| 4025256 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.59 | 45.0 | 4.59e-01 | 82.7% | 97.5% |
| 3361063 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.59 | 45.0 | 3.15e-01 | 81.5% | 42.3% |
| 3639842 | 5.1.4.321 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30361 | 0.59 | 48.0 | 3.00e-01 | 91.4% | 24.5% |
| 4927221 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.59 | 51.0 | 3.95e-01 | 95.1% | 77.1% |
| 3482374 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 44.0 | 3.07e-01 | 81.5% | 34.2% |
| 3249061 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.58 | 46.0 | 3.08e-01 | 87.7% | 48.2% |
| 4973001 | 4041.1.1.0 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase | 0.58 | 50.0 | 3.81e-01 | 95.1% | 77.4% |
| 5040016 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.57 | 46.0 | 3.74e-01 | 87.7% | 97.4% |
| 3511086 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.57 | 49.0 | 3.27e-01 | 96.3% | 43.0% |
| None | — | 0.57 | 43.0 | 2.99e-01 | 84.0% | 35.6% | |
| 3739384 | 4075.1.1.2 ↗ | a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 | 0.56 | 40.0 | 3.77e-01 | 74.1% | 84.8% |
| 3593267 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 46.0 | 2.95e-01 | 95.1% | 47.6% |
| 4293623 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.55 | 46.0 | 2.88e-01 | 93.8% | 34.7% |
| 4110527 | 5.1.4.322 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_IFT122_1st | 0.55 | 45.0 | 3.09e-01 | 92.6% | 45.6% |
| 3207356 | 10.1.1.22 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF1349 | 0.55 | 46.0 | 3.60e-01 | 98.8% | 81.5% |
| 3488451 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 47.0 | 3.00e-01 | 96.3% | 48.0% |
| 4002813 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.55 | 42.0 | 3.52e-01 | 82.7% | 65.7% |
| 3308728 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 45.0 | 2.91e-01 | 93.8% | 24.6% |
| 3318685 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.54 | 43.0 | 4.05e-01 | 88.9% | 84.8% |
| 3935989 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 47.0 | 3.10e-01 | 100.0% | 33.6% |
| 3446029 | 859.1.1.1 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA | 0.54 | 44.0 | 3.60e-01 | 90.1% | 78.7% |
| 3961660 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 44.0 | 2.97e-01 | 96.3% | 39.7% |
| 3599752 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 44.0 | 2.84e-01 | 97.5% | 39.5% |
| 3684759 | 331.3.1.10 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AtaL | 0.52 | 40.0 | 3.20e-01 | 85.2% | 61.8% |
| 3473183 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.52 | 41.0 | 3.32e-01 | 90.1% | 81.2% |
| 3570221 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 42.0 | 3.55e-01 | 88.9% | 71.9% |
| 3966949 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.51 | 39.0 | 3.78e-01 | 81.5% | 74.4% |
| 3573161 | 2003.1.5.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth | 0.51 | 44.0 | 2.88e-01 | 100.0% | 37.8% |
| 3600727 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 43.0 | 2.96e-01 | 100.0% | 89.7% |
| 4296071 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 38.0 | 3.07e-01 | 81.5% | 59.4% |