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S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00503
Bact-VirS2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00503
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 60-134
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4750547_curated_closed_complete_prodigal-single.1__X__X__00821__D59-130
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00542.25 best | Ribosomal_L12 | 51.9 | 1.10e-13 | 100.0% | 97.0% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ctfA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.96 | 81.0 | 8.58e-01 | 100.0% | 97.1% |
| 1lzwA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.72 | 65.0 | 6.12e-01 | 100.0% | 83.5% |
| 4yjmC00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.72 | 64.0 | 6.27e-01 | 100.0% | 91.6% |
| 1rp5A03 | 3.30.70.2110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 58.0 | 5.57e-01 | 100.0% | 96.7% |
| 7o49B01 | 3.30.70.2110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 59.0 | 5.61e-01 | 100.0% | 89.0% |
| 1u9lB00 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.61 | 42.0 | 4.36e-01 | 70.7% | 98.6% |
| 6rxaA01 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.61 | 50.0 | 4.73e-01 | 86.7% | 85.1% |
| 2ib1A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.60 | 50.0 | 4.76e-01 | 96.0% | 89.0% |
| 3w0lD01 | 1.10.8.1080 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.59 | 41.0 | 3.76e-01 | 73.3% | 73.3% |
| 1kvkA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.58 | 52.0 | 4.18e-01 | 100.0% | 93.9% |
| 3mqmA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.58 | 46.0 | 3.91e-01 | 86.7% | 96.0% |
| 3k17A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.58 | 52.0 | 4.21e-01 | 100.0% | 96.4% |
| 1ez0B01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.57 | 47.0 | 3.22e-01 | 97.3% | 53.2% |
| 1z2iA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.56 | 44.0 | 4.16e-01 | 86.7% | 94.6% |
| 4i3vA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.55 | 47.0 | 3.24e-01 | 94.7% | 59.1% |
| 7w5lA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 45.0 | 3.22e-01 | 96.0% | 60.6% |
| 3n3dB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.53 | 39.0 | 2.67e-01 | 80.0% | 86.3% |
| 3ek3A01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.52 | 45.0 | 3.52e-01 | 97.3% | 70.2% |
| 3i0pA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.52 | 41.0 | 3.74e-01 | 89.3% | 96.3% |
| 3bs3A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 37.0 | 3.99e-01 | 93.3% | 98.3% |
| 6kjoA01 | 1.20.920.60 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.51 | 41.0 | 3.65e-01 | 97.3% | 89.5% |
| 4bq2D02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 40.0 | 2.45e-01 | 89.3% | 13.5% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.50 | 34.0 | 3.34e-01 | 92.0% | 63.5% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4479433 | 308.1.1.1 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 | 0.96 | 80.0 | 7.86e-01 | 98.7% | 81.2% |
| 3958135 | 308.1.1.0 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related | 0.94 | 81.0 | 7.94e-01 | 100.0% | 83.7% |
| 4162668 | 308.1.1.1 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 | 0.94 | 80.0 | 7.50e-01 | 100.0% | 75.3% |
| 4023942 | 308.1.1.1 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 | 0.92 | 79.0 | 7.72e-01 | 100.0% | 83.7% |
| 4250530 | 308.1.1.1 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 | 0.92 | 78.0 | 7.72e-01 | 100.0% | 84.8% |
| 3334453 | 308.1.1.1 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 | 0.83 | 78.0 | 7.09e-01 | 98.7% | 94.7% |
| 3787090 | 308.1.1.0 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related | 0.78 | 67.0 | 5.89e-01 | 100.0% | 64.5% |
| 4017933 | 308.1.1.0 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related | 0.77 | 67.0 | 5.96e-01 | 100.0% | 67.6% |
| 4643549 | 308.1.1.0 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related | 0.77 | 65.0 | 6.54e-01 | 100.0% | 92.0% |
| 3782919 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.75 | 64.0 | 6.05e-01 | 100.0% | 78.9% |
| 3838034 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.74 | 67.0 | 6.32e-01 | 100.0% | 84.4% |
| 435725 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.74 | 67.0 | 5.98e-01 | 100.0% | 72.4% |
| 4595959 | 308.1.1.0 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related | 0.74 | 67.0 | 6.59e-01 | 100.0% | 95.0% |
| 4080972 | 308.2.1.0 ↗ | a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain | 0.73 | 59.0 | 6.13e-01 | 100.0% | 95.7% |
| 4398897 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.72 | 65.0 | 5.96e-01 | 100.0% | 77.6% |
| 4660026 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.72 | 64.0 | 6.01e-01 | 100.0% | 81.7% |
| 3503894 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.72 | 64.0 | 6.33e-01 | 100.0% | 96.2% |
| 1936664 | 308.2.1.0 ↗ | a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain | 0.71 | 62.0 | 5.89e-01 | 100.0% | 95.6% |
| 3791732 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.71 | 64.0 | 5.59e-01 | 100.0% | 75.5% |
| 3587994 | 3962.1.1.0 ↗ | alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit | 0.65 | 48.0 | 4.92e-01 | 85.3% | 82.9% |
| 4013085 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.57 | 43.0 | 2.97e-01 | 80.0% | 89.2% |
| 5061335 | 102.1.1.11 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 | 0.55 | 42.0 | 3.86e-01 | 85.3% | 63.6% |
| 3282040 | 101.1.4.18 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 | 0.53 | 40.0 | 3.88e-01 | 81.3% | 94.1% |
| 4057001 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.50 | 42.0 | 4.11e-01 | 93.3% | 86.3% |