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S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00517

Bact-Vir

S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00517

Identity

Kingdom:
phage

Quality

68.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-75
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.64 53.0 4.98e-01 100.0% 73.5%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.64 48.0 5.10e-01 80.3% 100.0%
2gnrA01 6.10.30.10 Special › Helix non-globular › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › 0.63 43.0 4.26e-01 89.4% 68.1%
2h6cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 50.0 4.02e-01 100.0% 47.3%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 53.0 4.31e-01 100.0% 54.4%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 45.0 3.71e-01 84.8% 47.6%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 46.0 3.87e-01 89.4% 52.4%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 46.0 3.70e-01 87.9% 43.8%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 46.0 3.32e-01 89.4% 31.2%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 45.0 3.69e-01 89.4% 47.1%
1zx8A01 2.40.100.20 Mainly Beta › Beta Barrel › Cyclophilin › 0.58 39.0 3.27e-01 71.2% 100.0%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 48.0 3.98e-01 100.0% 55.0%
4jf6A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 40.0 2.86e-01 78.8% 83.3%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 49.0 3.91e-01 100.0% 56.2%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.38e-01 92.4% 85.7%
1fouA02 2.40.500.10 Mainly Beta › Beta Barrel › Upper collar protein gp10 (connector protein) fold › Upper collar protein gp10 (connector protein) 0.55 41.0 3.35e-01 81.8% 84.1%
5j3uA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 46.0 3.80e-01 100.0% 50.8%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.55 41.0 3.37e-01 83.3% 70.2%
4pqqA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 46.0 3.64e-01 100.0% 53.2%
2cdoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 48.0 3.78e-01 100.0% 61.6%
2pttB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 4.01e-01 98.5% 85.2%
3axsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 44.0 2.92e-01 98.5% 29.5%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.53 45.0 4.00e-01 100.0% 70.6%
5f1sA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.84e-01 95.5% 82.7%
1bteA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 36.0 3.32e-01 72.7% 92.4%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 42.0 3.29e-01 93.9% 63.6%
3enuA00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.52 45.0 3.84e-01 100.0% 98.2%
4dbhA02 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.52 42.0 3.12e-01 95.5% 82.9%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 42.0 3.44e-01 92.4% 81.2%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.81e-01 100.0% 56.4%
3f8uB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.67e-01 98.5% 88.1%
4nofB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.63e-01 90.9% 68.9%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 3.54e-01 100.0% 53.5%
1mzkA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 37.0 3.12e-01 75.8% 96.7%
1tf1B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 37.0 2.83e-01 77.3% 66.3%
4d7pA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.52 42.0 3.84e-01 97.0% 85.4%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 41.0 3.26e-01 93.9% 67.1%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 42.0 3.19e-01 93.9% 61.6%
5t89Y06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.75e-01 90.9% 88.0%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.51 41.0 3.54e-01 100.0% 53.1%
3webA00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.29e-01 87.9% 82.6%
6kbyA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 37.0 2.40e-01 80.3% 81.2%
2frgP00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.59e-01 92.4% 67.9%
2xhkB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 44.0 3.67e-01 100.0% 54.5%
2jjuA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.68e-01 95.5% 80.0%
1djsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.80e-01 100.0% 80.4%
1m4jA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 37.0 3.15e-01 84.8% 73.7%
2huhA01 2.60.40.1600 Mainly Beta › Sandwich › Immunoglobulin-like › Smr-associated-like 0.50 42.0 3.39e-01 95.5% 57.4%
4wgkA02 2.60.40.2300 Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain 0.50 43.0 3.50e-01 100.0% 71.4%
2l72A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.50 37.0 3.26e-01 86.4% 72.9%
3u7vA02 2.60.220.20 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › putative beta-Galactosidase from caulobacter crescentus 0.50 42.0 3.39e-01 100.0% 48.6%
4lplA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 42.0 3.42e-01 100.0% 58.5%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5012898 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 53.0 5.55e-01 84.8% 86.7%
5031010 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 51.0 5.05e-01 75.8% 75.7%
4952878 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.67 51.0 5.44e-01 84.8% 98.2%
4026244 4135.1.1.0 ↗ beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like 0.66 56.0 4.39e-01 92.4% 78.5%
5052150 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 49.0 5.19e-01 81.8% 98.2%
3594031 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 48.0 5.17e-01 89.4% 98.2%
4991294 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.62 44.0 4.85e-01 83.3% 100.0%
5016426 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.60 46.0 3.56e-01 84.8% 38.4%
4997723 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.60 47.0 3.68e-01 89.4% 42.6%
4034320 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.60 50.0 5.00e-01 95.5% 100.0%
4514555 1.1.5.18 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.59 47.0 3.44e-01 89.4% 34.9%
4947401 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 48.0 3.67e-01 89.4% 42.6%
4009281 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.59 51.0 4.44e-01 100.0% 63.8%
4429329 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 51.0 5.13e-01 97.0% 100.0%
4981706 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.59 47.0 3.63e-01 89.4% 42.9%
3036710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.91e-01 93.9% 96.8%
3519690 11.1.5.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PF31151 0.59 50.0 3.98e-01 100.0% 58.6%
4118226 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 50.0 5.00e-01 100.0% 95.7%
4261362 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 51.0 5.07e-01 100.0% 95.7%
5055064 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 46.0 4.77e-01 90.9% 95.0%
4527355 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 50.0 4.96e-01 100.0% 97.1%
1263519 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.57 46.0 4.72e-01 92.4% 96.8%
4656461 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 46.0 4.74e-01 95.5% 100.0%
4124780 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 48.0 4.71e-01 100.0% 91.8%
4998571 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 3.90e-01 100.0% 63.1%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.56 44.0 4.24e-01 93.9% 76.2%
4476045 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.55 48.0 4.73e-01 100.0% 97.1%
4088209 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.55 47.0 4.74e-01 97.0% 100.0%
4953054 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.30e-01 93.9% 78.7%
4451993 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.55 44.0 4.54e-01 95.5% 100.0%
4137973 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.55 44.0 3.89e-01 95.5% 66.4%
139950 4.1.1.126 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5608 0.55 42.0 4.45e-01 93.9% 100.0%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.55 45.0 4.61e-01 97.0% 96.9%
3411669 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 3.99e-01 98.5% 84.5%
4981128 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 3.85e-01 93.9% 88.6%
4342488 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.44e-01 98.5% 98.4%
3934782 633.23.1.3 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › L_HMGIC_fpl 0.53 39.0 2.91e-01 80.3% 84.2%
4332042 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 42.0 4.19e-01 93.9% 84.3%
4499953 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.53 42.0 4.33e-01 95.5% 100.0%
4662294 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 40.0 4.19e-01 89.4% 100.0%
3595541 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 37.0 2.50e-01 74.2% 19.6%
3859987 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.53 45.0 3.68e-01 98.5% 70.8%
4026957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 4.30e-01 97.0% 98.3%
5034040 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 4.18e-01 84.8% 98.2%
3474715 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 37.0 3.72e-01 72.7% 80.0%
3196883 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.53 40.0 3.25e-01 87.9% 69.3%
5074749 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 42.0 4.14e-01 93.9% 85.7%
3226640 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.76e-01 93.9% 86.9%
5058845 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 2.78e-01 97.0% 28.2%
185702 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.52 39.0 2.91e-01 80.3% 36.7%
2523019 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 43.0 3.68e-01 95.5% 79.1%
5004476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 39.0 3.95e-01 90.9% 86.2%
3231215 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.52 45.0 3.71e-01 100.0% 61.6%
4975764 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.52 41.0 4.07e-01 93.9% 85.7%
3863519 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.52 43.0 3.83e-01 100.0% 87.6%
3603108 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.51 39.0 3.14e-01 86.4% 92.4%
2524072 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.51 39.0 3.02e-01 87.9% 87.1%
5063433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 35.0 3.85e-01 75.8% 98.0%
4149821 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 4.09e-01 92.4% 96.7%
5036621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 38.0 3.98e-01 90.9% 100.0%
4936291 4.1.1.487 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7205 0.51 41.0 4.19e-01 90.9% 92.3%
3958275 3430.1.1.0 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain 0.51 36.0 3.28e-01 93.9% 53.7%
4954284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 38.0 3.95e-01 90.9% 93.3%
5065747 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.50 43.0 3.96e-01 100.0% 72.2%
2663669 4216.1.1.2 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.50 40.0 3.15e-01 93.9% 66.3%
3874667 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 41.0 3.57e-01 93.9% 81.9%