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S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00559

Bact-Vir

S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00559

Identity

Kingdom:
phage

Quality

70.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-71
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gksB01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.66 46.0 3.57e-01 73.1% 93.6%
3cr8A01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.64 45.0 3.51e-01 73.1% 75.9%
1t62B00 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.64 45.0 3.36e-01 74.6% 79.1%
1r3eA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.63 45.0 4.16e-01 74.6% 89.3%
2apoA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.61 43.0 3.78e-01 74.6% 76.8%
3oi8A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.60 38.0 3.46e-01 85.1% 47.3%
3ddjA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.59 38.0 2.97e-01 85.1% 31.6%
1sqwA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.59 41.0 3.90e-01 74.6% 95.2%
5zveA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.59 43.0 3.96e-01 77.6% 87.2%
3vseA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.58 42.0 4.23e-01 76.1% 94.2%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 39.0 2.92e-01 70.1% 30.1%
3zv0C01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.57 40.0 3.16e-01 74.6% 52.6%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.56 34.0 3.23e-01 82.1% 50.0%
1iq8A04 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.55 39.0 3.79e-01 76.1% 96.2%
1vr9A01 3.90.1280.20 Alpha Beta › Alpha-Beta Complex › CBS domain Like › 0.55 35.0 3.62e-01 83.6% 68.8%
3kxrA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 41.0 3.36e-01 82.1% 64.3%
3c0kA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.54 39.0 3.88e-01 76.1% 93.0%
1q7hA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.54 47.0 4.38e-01 98.5% 94.2%
2uv4A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 45.0 3.53e-01 98.5% 63.6%
3ocmB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 38.0 3.03e-01 97.0% 37.0%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.50 42.0 2.55e-01 97.0% 20.5%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4564300 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 46.0 4.37e-01 73.1% 96.2%
4932684 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 47.0 4.50e-01 74.6% 97.3%
4427103 1.1.9.10 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB_C 0.64 44.0 4.64e-01 71.6% 93.3%
4997514 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.63 44.0 4.01e-01 73.1% 84.4%
4299464 1.1.9.10 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB_C 0.63 45.0 4.36e-01 74.6% 93.3%
5076470 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.63 43.0 4.14e-01 70.1% 100.0%
4384734 1.1.9.10 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB_C 0.63 45.0 4.58e-01 74.6% 93.8%
4977465 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.63 43.0 3.91e-01 71.6% 90.0%
3960539 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.63 42.0 4.47e-01 70.1% 90.0%
4977675 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.63 44.0 3.94e-01 74.6% 80.0%
4278893 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.63 42.0 4.46e-01 70.1% 96.7%
4048693 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.62 43.0 4.30e-01 73.1% 91.4%
4582116 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.62 43.0 4.38e-01 73.1% 98.5%
4963284 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.62 42.0 4.06e-01 70.1% 94.6%
4948219 1.1.9.54 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PAPS_reduct 0.61 41.0 4.02e-01 70.1% 98.7%
5083059 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.61 44.0 4.06e-01 76.1% 90.6%
4949393 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.61 42.0 3.85e-01 73.1% 87.8%
5026832 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.61 43.0 4.00e-01 74.6% 90.6%
3595077 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.61 43.0 3.67e-01 74.6% 71.3%
4490064 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.61 41.0 3.92e-01 70.1% 96.2%
4927245 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.61 43.0 3.83e-01 74.6% 82.1%
4149342 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.61 43.0 4.26e-01 74.6% 95.7%
4453731 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.61 43.0 3.76e-01 74.6% 87.0%
434797 1.1.9.2 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA,DKCLD 0.60 43.0 3.25e-01 74.6% 49.7%
5077746 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.60 43.0 4.08e-01 74.6% 94.9%
4943587 1.1.9.54 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PAPS_reduct 0.60 42.0 3.93e-01 74.6% 89.4%
4362623 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.60 40.0 4.11e-01 70.1% 93.8%
5054628 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.59 41.0 3.85e-01 73.1% 89.4%
4994417 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.59 43.0 3.52e-01 77.6% 60.8%
4103393 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.59 41.0 4.32e-01 73.1% 93.3%
4054728 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.59 41.0 4.35e-01 74.6% 96.7%
4996509 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.59 42.0 4.09e-01 76.1% 100.0%
4432484 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.58 40.0 4.18e-01 71.6% 96.7%
4375569 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.58 43.0 4.03e-01 77.6% 96.2%
4088564 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.58 40.0 4.03e-01 73.1% 91.4%
4564336 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.58 40.0 4.20e-01 71.6% 98.3%
2834726 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.58 41.0 3.33e-01 76.1% 58.2%
5037242 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.58 41.0 3.48e-01 76.1% 67.8%
5051591 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.58 42.0 3.98e-01 77.6% 93.8%
5011405 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.57 41.0 4.11e-01 76.1% 92.9%
5042356 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.57 42.0 4.15e-01 77.6% 95.7%
4981753 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.57 41.0 3.71e-01 77.6% 78.9%
5024403 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.56 42.0 3.96e-01 79.1% 95.0%
4101732 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.55 40.0 4.00e-01 77.6% 100.0%
5011041 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.55 48.0 4.42e-01 94.0% 94.1%
5053836 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.55 46.0 4.15e-01 91.0% 88.9%
1546092 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 41.0 3.32e-01 82.1% 61.8%
5071144 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.53 41.0 3.37e-01 83.6% 65.6%
4585687 1.1.9.17 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.53 41.0 3.95e-01 82.1% 96.0%
187 1.1.9.17 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.53 39.0 3.86e-01 79.1% 95.8%
3886687 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.53 44.0 4.05e-01 94.0% 94.4%
5022982 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.53 39.0 3.75e-01 77.6% 100.0%
4945851 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.53 43.0 3.91e-01 89.6% 84.4%
4995302 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.53 46.0 3.46e-01 100.0% 91.8%
5056299 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.52 40.0 3.26e-01 82.1% 62.4%
4948023 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.52 43.0 4.03e-01 92.5% 95.3%
5076348 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.52 44.0 3.83e-01 92.5% 77.0%
5000539 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.52 41.0 3.85e-01 88.1% 88.2%
5048350 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.52 43.0 4.03e-01 92.5% 95.2%
4961055 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.52 45.0 4.02e-01 100.0% 81.8%
D2 high residues 74-164
PDB
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ecqA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 42.0 3.01e-01 85.7% 97.0%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.52 37.0 3.53e-01 72.5% 77.9%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.52 37.0 3.53e-01 78.0% 62.4%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.52 44.0 3.05e-01 98.9% 59.5%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.51 30.0 3.21e-01 75.8% 65.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3719688 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.64 57.0 4.13e-01 100.0% 38.8%
3772650 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.64 55.0 5.04e-01 95.6% 75.0%
3610069 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.63 57.0 4.31e-01 100.0% 47.9%
3499122 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.63 55.0 4.20e-01 100.0% 44.4%
4030440 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.63 55.0 4.05e-01 100.0% 38.4%
3728626 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.62 55.0 5.07e-01 100.0% 82.5%
3388896 79.1.1.27 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › MORN 0.62 55.0 4.69e-01 100.0% 77.3%
3761944 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.62 55.0 3.83e-01 100.0% 31.1%
3719416 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.62 55.0 4.82e-01 100.0% 68.3%
4003791 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.62 55.0 4.42e-01 100.0% 52.8%
4029170 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.62 53.0 5.22e-01 96.7% 92.0%
3595247 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.61 54.0 4.87e-01 100.0% 74.6%
3701923 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.61 52.0 4.79e-01 97.8% 78.4%
3709361 3523.1.1.4 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › MORN 0.61 54.0 5.05e-01 100.0% 81.7%
3719280 3523.1.1.4 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › MORN 0.60 52.0 3.19e-01 100.0% 15.5%
4030530 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.59 50.0 4.61e-01 96.7% 75.0%
3629117 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.59 51.0 4.38e-01 98.9% 62.0%
3720040 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.58 50.0 4.73e-01 96.7% 84.5%
3882845 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 48.0 3.59e-01 94.5% 63.0%
3165974 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.52 38.0 3.61e-01 78.0% 65.5%
2532167 7086.1.1.0 ↗ 0.51 29.0 2.92e-01 70.3% 54.4%
D3 medium residues 167-218
PDB